Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0904
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035655-1|AAH35655.1|  411|Homo sapiens C4orf23 protein protein.      31   1.1  
AK093044-1|BAC04031.1|  365|Homo sapiens protein ( Homo sapiens ...    31   1.1  
U47077-1|AAB39925.5| 4128|Homo sapiens DNA-dependent protein kin...    30   3.3  
U35835-1|AAA79184.1|  930|Homo sapiens DNA-PK protein.                 30   3.3  
U34994-1|AAC50210.3| 4097|Homo sapiens DNA dependent protein kin...    30   3.3  
AY316117-1|AAP69525.1| 4128|Homo sapiens protein kinase, DNA-act...    30   3.3  

>BC035655-1|AAH35655.1|  411|Homo sapiens C4orf23 protein protein.
          Length = 411

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   CRYLYLPTVFLDFISVYVCRFKSSQQI*KYLDY 106
           CR+  LP  F DFI  Y  R     Q  +YLD+
Sbjct: 201 CRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDF 233


>AK093044-1|BAC04031.1|  365|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35725 fis, clone TESTI2002802. ).
          Length = 365

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   CRYLYLPTVFLDFISVYVCRFKSSQQI*KYLDY 106
           CR+  LP  F DFI  Y  R     Q  +YLD+
Sbjct: 50  CRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDF 82


>U47077-1|AAB39925.5| 4128|Homo sapiens DNA-dependent protein kinase
            catalytic subunit protein.
          Length = 4128

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 307  TMMIDKAPGAIFDQSIVLEC*SNISSLINHCPSKILILQVFLSFSQNHFSVMMKLMR 137
            +M +D+  G   D+  V E   +ISSLI  C   + +  +  +  QN+FS+ MKL++
Sbjct: 3205 SMNVDQ-DGDPSDRMEVQEQEEDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLK 3260


>U35835-1|AAA79184.1|  930|Homo sapiens DNA-PK protein.
          Length = 930

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 307 TMMIDKAPGAIFDQSIVLEC*SNISSLINHCPSKILILQVFLSFSQNHFSVMMKLMR 137
           +M +D+  G   D+  V E   +ISSLI  C   + +  +  +  QN+FS+ MKL++
Sbjct: 7   SMNVDQ-DGDPSDRMEVQEQEEDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLK 62


>U34994-1|AAC50210.3| 4097|Homo sapiens DNA dependent protein kinase
            catalytic subunit protein.
          Length = 4097

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 307  TMMIDKAPGAIFDQSIVLEC*SNISSLINHCPSKILILQVFLSFSQNHFSVMMKLMR 137
            +M +D+  G   D+  V E   +ISSLI  C   + +  +  +  QN+FS+ MKL++
Sbjct: 3205 SMNVDQ-DGDPSDRMEVQEQEEDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLK 3260


>AY316117-1|AAP69525.1| 4128|Homo sapiens protein kinase,
            DNA-activated, catalytic polypeptide protein.
          Length = 4128

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 307  TMMIDKAPGAIFDQSIVLEC*SNISSLINHCPSKILILQVFLSFSQNHFSVMMKLMR 137
            +M +D+  G   D+  V E   +ISSLI  C   + +  +  +  QN+FS+ MKL++
Sbjct: 3205 SMNVDQ-DGDPSDRMEVQEQEEDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLK 3260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,260,897
Number of Sequences: 237096
Number of extensions: 671314
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)