Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0904
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    28   2.6  
At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati...    27   4.6  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    26   8.0  

>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 RCLVNHHSPLYNILLLSTAPERGTRVDTXHKRXSSM 391
           RC  N H P +++ + +TA +RGT   +  K    M
Sbjct: 603 RCPANTHKPSFHVNMNATAAKRGTSGSSGQKGNQRM 638


>At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative
           identical to enhancer of rudimentary homolog SP:Q96319
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF01133 enhancer of rudimentary
          Length = 109

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 290 LVNHHSPLYNILLLSTAPERGTR 358
           + NH+S  + I+LL  +P R TR
Sbjct: 1   MANHNSSRHTIILLQNSPSRATR 23


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 272 KNSTRCLVNHHSPLYNILLLSTAPERGTRVDTXHKRXSSMRLT 400
           KN+  CL   HSP   +L LS +P     +    K  +  RL+
Sbjct: 192 KNNRCCLFCSHSPTSTLLNLSRSPSSSPPLSPADKADAFSRLS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,328,093
Number of Sequences: 28952
Number of extensions: 95199
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)