Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0901
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 59 3e-10
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 57 1e-09
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 28 0.58
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 4.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.1
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 7.1
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 7.1
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.1
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p... 25 7.1
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 24 9.4
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 9.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 24 9.4
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 59.3 bits (137), Expect = 3e-10
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +3
Query: 21 FSVEAIWG--ITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISVKA 194
F V A W T E++ A + +T K+D++L N+ LV I PN+H ++ +A
Sbjct: 30 FEVYAAWERRATSTESKARAAFPNVKVYT-KLDELLADSNIELVVISLPPNVHYEVVSQA 88
Query: 195 LGIGKHVVCDKPAGLCQAEALKMARAAQYYPTLISIVNHSLRFLPAFTHMRKCIQEG 365
L GKHV+C+KP EA ++ A+ L+ V + RF F ++CI+ G
Sbjct: 89 LNAGKHVLCEKPFTPTYGEAKELFDLAK-SKNLMLTVYQNRRFDGDFLTAKECIENG 144
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 57.2 bits (132), Expect = 1e-09
Identities = 34/106 (32%), Positives = 58/106 (54%)
Frame = +3
Query: 48 TLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDK 227
T+ +++ + I +TN +D++L N+ LV + PN+H++I KAL GKHVVC+K
Sbjct: 41 TVTQSKARSAYPNILVYTN-LDELLADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCEK 99
Query: 228 PAGLCQAEALKMARAAQYYPTLISIVNHSLRFLPAFTHMRKCIQEG 365
P EA ++ A+ L++I + R+ F +K I+ G
Sbjct: 100 PFTPTYEEAKELYELAESKSLLLAIYQNR-RWDGDFLTAKKIIESG 144
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 111 DDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMARAAQ 278
++++ V +V+I H ++ AL K V+C+KP + EAL++ A+
Sbjct: 74 EELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELAR 129
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 197 KCFDRYLSMKIWGTNYEN*TH 135
+CF+ +L+ K W +EN H
Sbjct: 280 QCFESHLNYKAWHLEFENEAH 300
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 191 FDRYLSMKIWGTNYEN*THILLEKDVV 111
++ LSM +W YE +L +KD V
Sbjct: 1149 YNYLLSMPLWSLTYERYVELLKKKDEV 1175
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 240 TVPLVYHKQHVFLYQVL 190
T PLVY HVFLY +L
Sbjct: 76 TGPLVYPGGHVFLYTLL 92
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 7.1
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +3
Query: 120 LLKKNVSLVFIVCAPNLHAQISVKAL 197
+++K+ L+F+ C + H+ ++V+ L
Sbjct: 378 IIRKSRRLIFVACGTSYHSCVAVRPL 403
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 122 SQEECEFSFHSLCPKSSCSDICQSTWYRKTCCL 220
SQE+C+F F ++ C D + +R CC+
Sbjct: 478 SQEDCQFIFDAI-----CEDPLDVSTHRHGCCV 505
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 140 THILLEKD-VVNFVCEERNFKFF 75
T+ LLEK+ +VN V ERNF F
Sbjct: 212 TNYLLEKNRIVNQVRNERNFHIF 234
>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 7.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 144 VFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMARAAQYYPTLISIVNHS 314
VF+ C P+L + S+ G++ + L Q + +K R A YYP S+ +HS
Sbjct: 111 VFVEC-PSLDSNSSLSWNRTGEYEAVTQT--LQQIDVVK--RMALYYPKTFSLTDHS 162
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 128 EECEFSFHSLC--PKSSCSDICQSTWYRKTCCL 220
E C SFH C P + +I + +W+ TC +
Sbjct: 133 EGCPCSFHLSCLEPPLTPENIPEGSWFCVTCSI 165
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 24 SVEAIWGITLQEAEIAAKELKI--PFFTNKIDDVLLKKNV 137
+ + I+G T+ A I L I PF N+I D+L KN+
Sbjct: 578 NADFIFGYTIGLASIIGGFLSISFPFDINRIHDLLSHKNL 617
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +2
Query: 134 CEFSFHSLCPKSSCSDICQSTWYRKTC 214
CE ++H+ C + I + WY C
Sbjct: 289 CEAAYHTSCLDPPLTSIPKEDWYCDAC 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,367
Number of Sequences: 5004
Number of extensions: 36078
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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