Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0901
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    31   0.32 
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    31   0.57 
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    29   1.7  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     29   1.7  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    27   9.2  
01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784     27   9.2  

>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 57  EAEIAAKELKIPFFTNKIDD--VLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKP 230
           E E  A+  ++PF  + +D   V +    S +F+    N   Q   KAL + KH+  ++ 
Sbjct: 141 EGEHVARVTEVPFSRSSLDHKAVFVVDTESKIFLFSGCNSSMQTRAKALDVVKHLKENRH 200

Query: 231 AGLCQ 245
            G C+
Sbjct: 201 CGRCE 205


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 86  NSFLHKQN*RRPSQE--ECEFSFHSLCPKSSCSDICQSTWYRKTC 214
           N FLH+++ R+  ++   CE  ++ L P S+C D C +      C
Sbjct: 73  NDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVLTSTEC 117


>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +3

Query: 120 LLKKNVSLVFIVCAPNL-HAQISVKALGIGK--HVVCDKPAGLCQAEALKMARAAQYYPT 290
           LL   +    +V +PN+ H QI +  +   K  H++ +KP      +  K+  AA+    
Sbjct: 125 LLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSD 184

Query: 291 LISIVNHSLRFLPAFTHMRKCIQEG 365
           ++  V    R++P    +   ++ G
Sbjct: 185 ILVQVGLEYRYMPPVAKLIDTVKSG 209


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 213 VVCDKPAGLCQAEALKMARAAQYYPTLISIVNHSLRFLPAFTHMR-KCIQEGY 368
           VVC+        E + + RA +   T++  V  +LRFLPA+   R  C  + Y
Sbjct: 108 VVCEPWPDAAAGEGIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSY 160


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 186  VKALGIGKHVVCDKPAGLCQAEALKMA-RAAQYYPTLISIVNHSLRFLPAFTHMRKCIQE 362
            +K++   +    D+  G C A A KM  R+  +  T++S +  S +     T +  CI+E
Sbjct: 1106 LKSVSTSRIEAQDELHGRCLAIAEKMVHRSTSHSSTVLSSMEMSSKANHILTTLLPCIEE 1165

Query: 363  GYA 371
            G A
Sbjct: 1166 GVA 1168


>01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784
          Length = 419

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  WGITLQEAEIAAKELKIPFF 98
           WG+TL  A++   E +IPFF
Sbjct: 159 WGLTLVAADLLLMENQIPFF 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,757,511
Number of Sequences: 37544
Number of extensions: 203410
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)