Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0901
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)         134   3e-32
SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)          37   0.009
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)          31   0.58 
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)        31   0.58 
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  29   2.3  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           27   5.4  
SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2)             27   5.4  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   7.2  
SB_41935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_40444| Best HMM Match : LIM (HMM E-Value=3.4)                       27   7.2  
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)                     27   9.5  
SB_26900| Best HMM Match : LIM (HMM E-Value=0.63)                      27   9.5  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)
          Length = 408

 Score =  134 bits (324), Expect = 3e-32
 Identities = 59/123 (47%), Positives = 88/123 (71%)
 Frame = +3

Query: 9   KXKGFSVEAIWGITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISV 188
           K  GF+V ++WG T  +A+  A    I + T+KID++LL+++V LV I+C P+  A+++V
Sbjct: 22  KAAGFTVSSLWGCTQHQAKTMAHRYDIGYSTSKIDELLLREDVDLVVILCPPHQRAEVAV 81

Query: 189 KALGIGKHVVCDKPAGLCQAEALKMARAAQYYPTLISIVNHSLRFLPAFTHMRKCIQEGY 368
           KAL IGKHV+C+ P+GL + EA +M  AAQYYP L+SI+ H LRF+P F  M++ I++GY
Sbjct: 82  KALSIGKHVLCEAPSGLSREEADRMVSAAQYYPRLLSIMKHELRFVPTFIKMKQLIEDGY 141

Query: 369 AWR 377
             R
Sbjct: 142 CGR 144


>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +3

Query: 144 VFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMARAAQYYPTLISIVNHSLRF 323
           VFI      H   +V     G H++ +KP  + + E  ++A A Q    ++++  H LR+
Sbjct: 79  VFICTQDQFHCGPAVSFASRGYHILLEKPMSVEEKECEEIAMACQKANVILAVC-HVLRY 137

Query: 324 LPAFTHMRKCIQEGY 368
            P    +++ I +GY
Sbjct: 138 FPPVLKIKEIIDQGY 152


>SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)
          Length = 336

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 132 NVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEA 254
           +V +V+I    + H ++ + AL  GKHV+C+KP  L   EA
Sbjct: 68  DVEVVYISTVNSTHKELCILALNHGKHVICEKPITLNLKEA 108


>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158  TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
            T Y    H+L    V+  + E      FCG    LQ YT   P+CF+
Sbjct: 920  TKYTGPHHVLTVDHVLGMIAEAEKKCTFCGTQLMLQGYTKSHPHCFS 966


>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
          Length = 634

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 150 IVCAPN-LHAQISVKALGIGKHVVCDKPAG--LCQAEALKMARAAQYYPTLISIVNHSLR 320
           ++C P  +H Q  + AL  GK V C+KP    L   EA       Q  P   ++   + R
Sbjct: 76  VICTPTPVHEQCVLMALRAGKAVFCEKPIADTLASTEACYDEAEKQGLPLFCAL---NRR 132

Query: 321 FLPAFTHMRKCIQEG 365
           F P F  + +  ++G
Sbjct: 133 FDPGFRSIIESAKKG 147


>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
          Length = 805

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 51  LQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPN-LHAQISVKALGIGKHVVCDK 227
           LQE +  AK L+    +  + D  +K       +VC P  LH Q  + AL  GK V C+K
Sbjct: 514 LQERKTHAKVLQFCEASVALSDPSVK-----AVLVCTPTPLHEQCVLMALRAGKAVFCEK 568

Query: 228 P 230
           P
Sbjct: 569 P 569


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 291 ALDNTVLHEPSSMLQLGTVPLVYHKQHV 208
           ALD   +H+P+ ++Q+ T+P + H+ HV
Sbjct: 392 ALDALNIHQPT-VIQMVTIPKIIHRHHV 418


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + +  N    CG    LQ YT   P CF+
Sbjct: 465 TKYTGPHHVLTVDHVLGMIADAENKCPLCGTQLLLQGYTKSHPQCFS 511


>SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2)
          Length = 523

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + + R     CG    LQ YT   P CF+
Sbjct: 468 TKYTGPHHVLTVNHVLGTIADARKKCTLCGTQLLLQGYTKSHPQCFS 514


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/64 (23%), Positives = 23/64 (35%)
 Frame = +2

Query: 23   FC*SNMGYNFARSRDSRKRT*NSFLHKQN*RRPSQEECEFSFHSLCPKSSCSDICQSTWY 202
            +C S+ G  +    DS KR      H +      +       H +C   +   +C   WY
Sbjct: 1894 YCKSSNGSYYYCKHDSGKRVCLDDWHGERCNVYCKPRNNSEGHYICDIMTGEKVCHKNWY 1953

Query: 203  RKTC 214
             K C
Sbjct: 1954 GKNC 1957


>SB_41935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + E       CG    LQ YT   P CF+
Sbjct: 242 TKYTGSHHVLTVDHVLGMIAEAEKKCMVCGTQLLLQRYTKSHPQCFS 288


>SB_40444| Best HMM Match : LIM (HMM E-Value=3.4)
          Length = 304

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + E       CG    LQ YT   P CF+
Sbjct: 230 TKYTGPHHVLTVDHVLGMIAEAEKKCTLCGTQLLLQGYTKSHPQCFS 276


>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 274 AARAIFNASAWHSPAGLSQTTCFPIPSAL 188
           A  +I  A+  HSP+G S + C   P+A+
Sbjct: 332 ATSSISQAALDHSPSGFSHSACVNCPTAI 360


>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
          Length = 391

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 293 ERWIILCCTSHLQCFSLAQSRW--FITNNMFSYTKCFDRY 180
           +RW +  C  HL  F+    RW  F   + +S   C DR+
Sbjct: 112 DRWSVFTCIDHLLVFTCV-DRWSVFTCVDRWSVFTCVDRW 150


>SB_26900| Best HMM Match : LIM (HMM E-Value=0.63)
          Length = 333

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + +       CG    LQ YT   P CF+
Sbjct: 259 TKYTGPNHVLTVDHVLGMIADAEKKCTLCGTQLLLQGYTKSHPQCFS 305


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 149 HSLCPKSSCSDICQSTWYRKTC 214
           H  C K S + IC   WY + C
Sbjct: 652 HYTCQKISGAKICHENWYGQAC 673


>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -2

Query: 158 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 27
           T Y    H+L    V+  + E       CG    LQ YT   P CF+
Sbjct: 656 TKYTGSHHVLTVDHVLGMIAEAEKKCTVCGAQLLLQGYTKSHPQCFS 702


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,269
Number of Sequences: 59808
Number of extensions: 257155
Number of successful extensions: 735
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)