Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0901
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor pr...    29   1.6  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    23   2.9  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   4.8  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.       27   8.3  
AL032653-2|CAC70145.1|  264|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor
           protein 12 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +3

Query: 45  ITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCD 224
           +T+++   A +  K P   N I D   K NV+L ++   P  + Q++  A G  +  +  
Sbjct: 81  VTMKDRASAERACKDP---NPIIDGR-KANVNLAYLGAKPRTNVQLAALAAGQVQLPLTT 136

Query: 225 KPAGLCQAEALKMARAAQYYPTLISIVN 308
           +   L Q    +M     YYPT+  +VN
Sbjct: 137 QLQALFQP---RMGLPQMYYPTVTGLVN 161


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 23.4 bits (48), Expect(2) = 2.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 170  SCSDICQSTWYRKTCC 217
            SC DI + T +  TCC
Sbjct: 1489 SCQDIDECTEHNSTCC 1504



 Score = 23.0 bits (47), Expect(2) = 2.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 113  RRPSQEECEFSFHSLCPKSSCSDI 184
            RR     CE  F    PK SC D+
Sbjct: 1428 RRTGVCRCEPGFEGAPPKKSCVDV 1451


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 263  HLQCFSL-AQSRWFITNNMFSYT-KCFDRYLSMKIWGTNYEN 144
            H +C  L  QS   +++NMF    +CF   LS+ + G+N EN
Sbjct: 1779 HEECAKLHEQSVNLLSDNMFGERLRCFVELLSLLLSGSNVEN 1820


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 263  HLQCFSL-AQSRWFITNNMFSYT-KCFDRYLSMKIWGTNYEN 144
            H +C  L  QS   +++NMF    +CF   LS+ + G+N EN
Sbjct: 1779 HEECAKLHEQSVNLLSDNMFGERLRCFVELLSLLLSGSNVEN 1820


>Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical
           protein F59C6.2 protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 53  QSYTPYCFNRKSFLLSR 3
           Q + PYCFNR  +L++R
Sbjct: 124 QCWPPYCFNRYYYLITR 140


>U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.
          Length = 562

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 ARAAQYYPTLISI-VNHSLRFLPAFTHMRKCIQEG 365
           AR A Y  +L ++ VNH + + P   H+ +CI +G
Sbjct: 69  ARNAVYNLSLSTLSVNHKIDWKPPAEHIEECIMKG 103


>AL032653-2|CAC70145.1|  264|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1b protein.
          Length = 264

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 ARAAQYYPTLISI-VNHSLRFLPAFTHMRKCIQEG 365
           AR A Y  +L ++ VNH + + P   H+ +CI +G
Sbjct: 69  ARNAVYNLSLSTLSVNHKIDWKPPAEHIEECIMKG 103


>AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1a protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 ARAAQYYPTLISI-VNHSLRFLPAFTHMRKCIQEG 365
           AR A Y  +L ++ VNH + + P   H+ +CI +G
Sbjct: 69  ARNAVYNLSLSTLSVNHKIDWKPPAEHIEECIMKG 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,906
Number of Sequences: 27780
Number of extensions: 204204
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)