Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0901
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.2  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 279 YYPTLISIVNHSLRFLPAFTHMRKCIQE-GY 368
           Y+P+LI    H  +F P    +   I+E GY
Sbjct: 45  YFPSLIGANEHYSKFFPVSEILSFLIEESGY 75


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 296 FYC*SFTEIFTSIHSYEKVYSRGIC 370
           F C    ++ T  H+ EK Y+  IC
Sbjct: 213 FTCSKQLKVHTRTHTGEKPYTCDIC 237


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 305 NNRNERWIILCCTSHLQC 252
           NNR   W +     H QC
Sbjct: 419 NNRRNPWFVEFWEHHFQC 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,603
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)