Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0899
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   6.6  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.7  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 708 RVKITNFYYYYXWNILPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKYKNDISLK 538
           R + T FY+ +  N  P+      NI Y++ + N   YR      +  K KN + LK
Sbjct: 109 RFEDTKFYFVHYSNS-PIEPFAKPNISYVNPQWNELDYRPDSQKLSPGKEKNTLDLK 164


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 389 TKNSLRRHTFIFRRKLDS*TSTSLACKSDSRPYP 288
           TK+ L  +  I R++ +  +STSL   S  +P P
Sbjct: 310 TKSQLELYQSILRKRANQVSSTSLTKSSSPKPLP 343


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  SFYDDEDCLYVYVYSYQDTR 97
           +FYDD + LYV ++ Y++ R
Sbjct: 244 AFYDDPNVLYVSLHRYENGR 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,171
Number of Sequences: 5004
Number of extensions: 59189
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)