Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0899
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    31   0.74 
04_04_0042 + 22328464-22329858                                         31   0.98 
07_01_0066 - 470595-470724,470877-471040,471552-471593,471730-47...    30   2.3  
03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379     29   3.0  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    28   6.9  
05_06_0053 - 25202103-25202510,25202818-25202841                       28   9.1  

>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 169 RDRRHSAGRAGAVDAVEDGHHHTRPTRVRTLRKGTYDGQMGYGRESD 309
           R R  S  R    D+ ED HHH    R R   +G  D +  +GR+ D
Sbjct: 316 RTRERSHDRTRERDSKEDRHHHRDRDRTRDRERGR-DRERDHGRDRD 361


>04_04_0042 + 22328464-22329858
          Length = 464

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 14  ETLNEHLCSFYDDEDCLYVYVYSYQDTRKVVIRAQK 121
           + L+ H C   DDE C Y Y YS   T +  +   K
Sbjct: 150 DELDVHRCGHDDDESCQYTYTYSGNATTEGTLAVDK 185


>07_01_0066 -
           470595-470724,470877-471040,471552-471593,471730-471771,
           472147-472246,472396-472460,473015-473101,473795-473873,
           474490-474558,476290-476474
          Length = 320

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 3   SKPTKLSTSTCAVSMTTKTVCTCTSILTKTLGKWSSGRRRNENALKRYQ 149
           S+ T    +TC  S +T  +C    +++KTLG W    R+ +  ++  Q
Sbjct: 110 SEITLPQLTTCTASRSTHGICFQYCLMSKTLGNWCHEYRKLKAKIETIQ 158


>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
          Length = 373

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 238 VYGGGHLPQHQQRQPDQHYGG 176
           ++G GH   H Q QP QH+GG
Sbjct: 1   MFGFGHHGHHGQDQPPQHHGG 21


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 223 HLPQHQQRQPDQHYGGDHAQDYTQ 152
           H  Q+ QRQP QH+  +H Q + Q
Sbjct: 44  HHQQYVQRQPQQHHHHNHHQQHQQ 67


>05_06_0053 - 25202103-25202510,25202818-25202841
          Length = 143

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 139 KGTNLGYSPGRDRRHSAGRAGAVDAVEDGHHHTRPTRVRTLRKGTYDGQMGY 294
           +GT      G +R    G  GA    + GH+     ++ TLR G   G+MGY
Sbjct: 96  RGTLESLRDGEEREEGEGEEGA----KTGHYTVEGPKL-TLRHGIVSGRMGY 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,955
Number of Sequences: 37544
Number of extensions: 352860
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)