Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0899
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 81 7e-16
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0) 73 3e-13
SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_48535| Best HMM Match : DUF412 (HMM E-Value=3.5) 29 3.0
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 29 5.3
SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3) 29 5.3
SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14) 28 7.0
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 28 7.0
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 28 7.0
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1) 28 9.3
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 9.3
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 81.4 bits (192), Expect = 7e-16
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = +2
Query: 35 CSFYDDEDCLYVYVYSYQDTRKVVIRAQKERECPKKVPXXXXXXXXXXXXXXXXXXXXML 214
C F D +DC + + Y + +++VI QKER+CP++ ++
Sbjct: 612 CLFEDQDDCFFTFAYRENENQELVIYVQKERDCPEEAEALAVILGVVGGVLGVGLALLLI 671
Query: 215 WKMATTIHDRREFARFEKERMMAKWDT 295
WK+ TI DRREFA+FEKER AKWDT
Sbjct: 672 WKLLATIQDRREFAKFEKERQNAKWDT 698
>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 467
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 EDCLYVYVYSYQ-DTRKVVIRAQKERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMAT 229
+ C Y + Y + D + + Q++++CP+ P ++ K+
Sbjct: 365 DKCTYYFTYDKRADGKTYDLYVQEKQDCPEPAPILAIVLGVVGGILLIGLLLLLIGKIMV 424
Query: 230 TIHDRREFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGK 358
++ DR E+ +FE++RM +KW +NP+YK+A +TF+NPTYAG+
Sbjct: 425 SMVDRIEYKKFERDRMRSKWHREKNPLYKEAKTTFENPTYAGR 467
>SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 239 DRREFARFEKERMMAKWDT 295
DRREFA+FEKER AKWDT
Sbjct: 91 DRREFAKFEKERSQAKWDT 109
Score = 34.7 bits (76), Expect = 0.081
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 35 CSFYDDEDCLYVYVYSYQDTRKVVIRAQKER 127
CSF DD+DC + + Y D ++ + +KER
Sbjct: 5 CSFQDDDDCTFTFAYQPTDDYRLEVFVEKER 35
>SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 239 DRREFARFEKERMMAKWDT 295
DRREFA+FEKER AKWDT
Sbjct: 168 DRREFAKFEKERSQAKWDT 186
Score = 34.7 bits (76), Expect = 0.081
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 35 CSFYDDEDCLYVYVYSYQDTRKVVIRAQKER 127
CSF DD+DC + + Y D ++ + +KER
Sbjct: 82 CSFQDDDDCTFTFAYQPTDDYRLEVFVEKER 112
>SB_48535| Best HMM Match : DUF412 (HMM E-Value=3.5)
Length = 282
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 544 RNVVFIFNMCLTVYSFPVGKTIAFMTN 624
+ + FI N CL FP+ KT+AF+ N
Sbjct: 76 KTLAFIKNTCLYQKHFPLSKTLAFIKN 102
>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 726 QNIIQFRVKITNFYYY-YXWNILPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKY-KN 553
+N +Q R I + Y+ Y N L + + +IQY + NS R I+ + KY +N
Sbjct: 18 ENSLQVRTLIAHIQYHKYNENSLQVRTNI-AHIQYHKYNENSLQVRTHIEHIQYHKYNEN 76
Query: 552 DISLKAH 532
+ ++ H
Sbjct: 77 SLQVRTH 83
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 726 QNIIQFRVKITNFYYY-YXWNILPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKYKND 550
+N +Q R I + Y+ Y N L + + + +IQY + NS R I+ + KY N+
Sbjct: 37 ENSLQVRTNIAHIQYHKYNENSLQVRT-HIEHIQYHKYNENSLQVRTHIEHIQYHKY-NE 94
Query: 549 ISLK 538
SL+
Sbjct: 95 NSLQ 98
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/73 (31%), Positives = 30/73 (41%)
Frame = +1
Query: 85 PRHSESGHQGAEGTRMP*KGTNLGYSPGRDRRHSAGRAGAVDAVEDGHHHTRPTRVRTLR 264
PR + HQ + TR SP R H A ++ DGHHH ++ T
Sbjct: 538 PRIISTRHQSVQRTR---SSPTFVSSPKPSRTH------ATQSIRDGHHHPSRSKSATPY 588
Query: 265 KGTYDGQMGYGRE 303
G D Q+G RE
Sbjct: 589 AGR-DRQLGNYRE 600
>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
Length = 269
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 726 QNIIQFRVKITNFYYY-YXWNILPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKY-KN 553
+N +Q R I + Y+ Y N L + + +IQY + NS R I+ + KY +N
Sbjct: 189 ENSLQVRTLIAHIQYHKYNENSLQVRTNI-AHIQYHKYNENSLQVRTHIEHIQYHKYNEN 247
Query: 552 DISLKAH 532
+ ++ H
Sbjct: 248 SLQVRTH 254
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 726 QNIIQFRVKITNFYYY-YXWNILPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKYKND 550
+N +Q R I + Y+ Y N L + + + +IQY + NS R I+ + KY N+
Sbjct: 208 ENSLQVRTNIAHIQYHKYNENSLQVRT-HIEHIQYHKYNENSLQVRTHIEHIQYHKY-NE 265
Query: 549 ISLK 538
SL+
Sbjct: 266 NSLQ 269
>SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)
Length = 404
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 663 LPLYSVY*RNIQYISHESNSFSYRKRIDSKAHIKYKNDISLKAHF*GNS*CSPASKSF-S 487
LP++++ NI + H+ +F K SKA + + ++ H + CS S S +
Sbjct: 164 LPVFTLLSENINVVDHKQWTFYREKSATSKAKFRSELEMHSWDHIPDDDPCSAYSNSLDT 223
Query: 486 YTSL*KY*KCMAL 448
+T++ Y C L
Sbjct: 224 FTTI--YNNCFPL 234
>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1580
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 553 RHFFKGTLLRQLLMFASI*KLQLYVTIKILEMYGARNKDRN*TFTSYHFV 404
RH F G R + I LQ+ V I+ ++ G RN+ + +FT +H V
Sbjct: 79 RHIFDG---RAEALIPQISYLQVLVLIESFDLEGLRNQMDDGSFTKHHIV 125
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 9 PTKLSTSTCAVSMTTKTVCTCTSILTKTLGKWSS 110
PTK +S+CA++ T T TS+ TL ++S
Sbjct: 198 PTKSESSSCALTTTPSCALTTTSLHPGTLATFAS 231
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 9 PTKLSTSTCAVSMTTKTVCTCTSILTKTLGKWSS 110
PTK +S+CA++ T T TS+ TL ++S
Sbjct: 50 PTKSESSSCALTTTPSCALTTTSLHPGTLATFAS 83
>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
Length = 1463
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 17 TLNEHLCSFYDDEDCLYVYVYSYQDTRKVVIRAQKERECPKKVP 148
T+++ + +ED + + VYS+ +R V Q R + VP
Sbjct: 279 TIDDQTATITPEEDIIIIQVYSHMTSRSVSTELQTHRSNRRVVP 322
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 17 TLNEHLCSFYDDEDCLYVYVYSYQDTRKVVIRAQKERECPKKVP 148
T+++ + +ED + + VYS+ +R V Q R + VP
Sbjct: 748 TIDDQTATITPEEDIIIIQVYSHMTSRSVSTELQTHRSNRRVVP 791
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 263 EKERMMAKWDTGENPIYKQATSTFKNPTYAGK*KCAFVNCFLYFMY*YKMIGCKCSITIF 442
+KER W T N + T P+Y C N F Y ++G CS+
Sbjct: 94 DKERSYVPWKTALNALSYLKTVLANRPSYGNLQSCPKYNRFRYLR--GAILGSACSVG-- 149
Query: 443 IPSAI 457
+P A+
Sbjct: 150 LPEAV 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,995
Number of Sequences: 59808
Number of extensions: 431140
Number of successful extensions: 1154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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