Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0899
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...   145   1e-36
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    39   1e-04
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   1.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   4.4  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   5.8  
L76433-1|AAC27659.1|  392|Anopheles gambiae tryptophan oxygenase...    23   7.6  
L76432-1|AAC27663.1|  392|Anopheles gambiae tryptophan oxygenase...    23   7.6  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   7.6  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
            protein.
          Length = 837

 Score =  145 bits (352), Expect = 1e-36
 Identities = 65/119 (54%), Positives = 82/119 (68%)
 Frame = +2

Query: 2    IEANETLNEHLCSFYDDEDCLYVYVYSYQDTRKVVIRAQKERECPKKVPXXXXXXXXXXX 181
            +  +E  N++ C+F+D++DC + + Y+  D  KVV+ AQ+ RECP KV            
Sbjct: 719  VTIDEERNDNKCTFFDEDDCRFEFSYNDSDQDKVVVTAQENRECPPKVFMLGIVLAVIAV 778

Query: 182  XXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGK 358
                     +LWK+ T+IHDRREFARFEKERMMAKWDTGENPIYKQAT+TFKNPTYAGK
Sbjct: 779  VVLIGMAVLLLWKVLTSIHDRREFARFEKERMMAKWDTGENPIYKQATTTFKNPTYAGK 837


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
            subunit AgBnu protein.
          Length = 803

 Score = 39.1 bits (87), Expect = 1e-04
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
 Frame = +2

Query: 35   CSF-YDDED--CLYVYVYSYQDTRKVVIRAQKERECPKKVPXXXXXXXXXXXXXXXXXXX 205
            C+F + DE   C Y + Y   + R+ +++ Q   +C K++                    
Sbjct: 692  CTFRFSDEKNVCDYRFSYELANNRETLLKVQN-LQC-KEINLIAAGFTIAASIIIGGLLM 749

Query: 206  XMLWKMATTIHDRREFARFEKERMMAKWDTGENPIYKQATSTFKNP 343
               ++      DR+ FA+FEKER        E+P+YK   S FK P
Sbjct: 750  LFCYRCKIMYDDRKMFAKFEKEREQETKYQMESPLYKSPISNFKVP 795


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 214 QHQQRQPDQHYGGDHAQDYT 155
           QHQ  Q  QH G  HAQ ++
Sbjct: 646 QHQHHQAHQHQGQHHAQHHS 665


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 475 IKILEMYGA---RNKDRN*TFTSYHFVLVHKIQKTVY 374
           +++L  +G    R KDRN   T +H   VH  Q+ +Y
Sbjct: 403 LEVLAWFGEQRNRPKDRNQPATLHHHQQVHNQQRILY 439


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 194 RPALWRRSRPGLYPRLVP 141
           RP  W RSRP   P+ +P
Sbjct: 284 RPTSWPRSRPTSKPKRLP 301


>L76433-1|AAC27659.1|  392|Anopheles gambiae tryptophan oxygenase
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 193 RAGAVDAVEDGHH 231
           R+G VD+V+ GHH
Sbjct: 6   RSGFVDSVQGGHH 18


>L76432-1|AAC27663.1|  392|Anopheles gambiae tryptophan oxygenase
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 193 RAGAVDAVEDGHH 231
           R+G VD+V+ GHH
Sbjct: 6   RSGFVDSVQGGHH 18


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 340 SNLRRKIKVCLRKLFFVFYVLIQND 414
           SNL+RKIK   R+ F      ++N+
Sbjct: 313 SNLKRKIKASKRRCFLALCDEVENN 337


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,040
Number of Sequences: 2352
Number of extensions: 14976
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)