Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0899
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    28   5.8  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    28   5.8  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    28   7.6  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   7.6  

>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 178 RHSAGRAGAVDA--VEDGHHHTRPTRVRTLRKGTYDGQMGYGRESDLQASDVD 330
           RH + R    D+  VE GH H    R++   K   +  +    +SDL+AS  D
Sbjct: 759 RHRSSRRKHEDSSDVEHGHRHKSSKRIKKDEKTVEEETVSKSDQSDLKASPGD 811


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 178 RHSAGRAGAVDA--VEDGHHHTRPTRVRTLRKGTYDGQMGYGRESDLQASDVD 330
           RH + R    D+  VE GH H    R++   K   +  +    +SDL+AS  D
Sbjct: 759 RHRSSRRKHEDSSDVEHGHRHKSSKRIKKDEKTVEEETVSKSDQSDLKASPGD 811


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 282 AIIRSFSKRANSRRSCMVVAIFHSINSASPTSTMAAITPRTIPKIGTFLGHSRSFCALMT 103
           A  R+F  R     +     +F  +  AS    +  +T  +  K   +LGH  +FC L+ 
Sbjct: 147 AKFRAFGLRIGYVGNICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFCFLVH 206

Query: 102 T--FRVSW 85
           T  F + W
Sbjct: 207 TVVFLIYW 214


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +1

Query: 91  HSESGHQGAEGTRMP*KGTNLGYSPGRDR---RHSAGRAGAVDAVEDGHHHTRPTRVRTL 261
           HSES H  + G+R P      G+S G  +   ++ AG+        D   H R    R  
Sbjct: 59  HSESSHNFSGGSREPSVAAEEGHSRGSSKEMTQNGAGKESFSPPNADKRDHFRYDGRRNR 118

Query: 262 RKGTYDGQMGYGRESDLQ 315
            +G   G  G    S LQ
Sbjct: 119 SRGRGTGAAG-SSSSQLQ 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,607
Number of Sequences: 28952
Number of extensions: 292746
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)