Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0897
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 299 1e-81
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 298 3e-81
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 297 3e-81
At4g17840.1 68417.m02661 expressed protein 29 2.2
At5g47870.1 68418.m05914 expressed protein 29 3.9
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.9
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 6.8
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 9.0
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g07490.1 68414.m00802 expressed protein 27 9.0
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 299 bits (733), Expect = 1e-81
Identities = 138/199 (69%), Positives = 158/199 (79%)
Frame = +2
Query: 17 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 196
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 197 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 376
RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 377 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 556
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+E
Sbjct: 128 RVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQE 187
Query: 557 GRLANDGCIVQYRPEHGPL 613
R+ DG ++ HGPL
Sbjct: 188 KRVVPDGVNAKFLSCHGPL 206
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 298 bits (731), Expect = 3e-81
Identities = 137/199 (68%), Positives = 156/199 (78%)
Frame = +2
Query: 17 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 196
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 197 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 376
RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 377 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 556
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR
Sbjct: 128 RVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAM 187
Query: 557 GRLANDGCIVQYRPEHGPL 613
R+ DG ++ HGPL
Sbjct: 188 KRIVPDGVNAKFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 297 bits (730), Expect = 3e-81
Identities = 137/199 (68%), Positives = 158/199 (79%)
Frame = +2
Query: 17 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 196
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEA 67
Query: 197 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 376
RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 377 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 556
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+E
Sbjct: 128 RVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQE 187
Query: 557 GRLANDGCIVQYRPEHGPL 613
R+ DG ++ HGPL
Sbjct: 188 KRIVPDGVNAKFLSCHGPL 206
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 393 SPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 566
S S C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 19 SSSSWCSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 257 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 436
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 437 VIEALRRAKFKFP 475
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 179 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 310
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 155 SDEYEQLSSEALEAGRICCNKYLV 226
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 203 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 292
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 107 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 280
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 384 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 512
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 384 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 512
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 438 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 539
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,739
Number of Sequences: 28952
Number of extensions: 373935
Number of successful extensions: 1106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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