Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0895
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.76 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.76 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 360 VQLSLPWRLCG-PW 398
           +++ LPWR CG PW
Sbjct: 130 LRIDLPWRTCGNPW 143



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +2

Query: 377 LETMWTVASSPWKQYACSSPT 439
           ++  W    +PW    C +PT
Sbjct: 132 IDLPWRTCGNPWNTRYCLTPT 152


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 360 VQLSLPWRLCG-PW 398
           +++ LPWR CG PW
Sbjct: 183 LRIDLPWRTCGNPW 196



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +2

Query: 377 LETMWTVASSPWKQYACSSPT 439
           ++  W    +PW    C +PT
Sbjct: 185 IDLPWRTCGNPWNTRYCLTPT 205


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 151 FLLRYRCLTHLCLCLPSDILYVYEIW-LNRI 62
           +LL  +CLT +CL   S I+    +W +N+I
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILLWFINKI 411


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 469 KERNSRDI*SCRRGAGILFPRTACHGPHSLQG 374
           KE+ SR+    RR    L  +T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -1

Query: 693 HVCRPHDPPDLFHSLQVRRQTAVTTEDFLV 604
           ++C     PD+  ++ +RR+T   T + ++
Sbjct: 216 YICCEEPYPDIVFNITLRRKTLFYTVNLII 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,739
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)