Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0891
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   0.34 
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    28   0.79 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   1.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   5.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.3  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   9.7  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   9.7  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    25   9.7  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 SSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANR 395
           +  EI + LY A A+   +  YD  ++GGG  G V A R
Sbjct: 27  AQIEISKRLYSAKAS--GNGEYDLCVIGGGPGGYVAAIR 63


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 437
           P    +D++++GGGS G   A R  +     V +IEA
Sbjct: 3   PISKVFDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 333 DSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 443
           D  YD I++G G   CVL+  L  V    VL I+  D
Sbjct: 2   DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 317 RQRASRFELRLHNRGRRISRLRT 385
           ++RA + ELR+H   +RIS +R+
Sbjct: 215 KERAEKIELRVHESLKRISCIRS 237


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 294  GEPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWS 419
            G P+Y A   +      DF  +   S GCV+   +T    WS
Sbjct: 1208 GTPMYMAPEIILGTKKGDFGAMDIWSLGCVILEMMTGSTPWS 1249


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 321 NVPADSSYDFIIVGGGSAGCVLA 389
           NV   S +D +I+GGG+ G  +A
Sbjct: 61  NVEDISKFDVLIIGGGATGTGVA 83


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 330 ADSSYDFIIVGGGSAGCVLANRL 398
           A + +  ++VGGGSAG  +A+++
Sbjct: 25  ASTHHKVLVVGGGSAGISVAHQI 47


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 309 PAHANVPADSSYDFIIVGGGSAGCVL 386
           P  A+ P D++ D  ++G GSA  VL
Sbjct: 223 PKAASRPFDANRDGFVIGEGSAALVL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,571
Number of Sequences: 5004
Number of extensions: 35454
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)