Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0891
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 44 6e-05
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 43 1e-04
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 43 2e-04
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 43 2e-04
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 43 2e-04
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 41 7e-04
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 40 0.001
03_05_0695 - 26851370-26851495,26852949-26853398 30 1.4
04_04_1647 + 35032328-35033803 29 1.8
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 29 3.2
07_01_0601 + 4464745-4465010,4465274-4466582 29 3.2
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 29 3.2
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 29 3.2
03_02_0578 + 9603118-9605633,9605766-9605781 28 4.3
07_03_0683 + 20671067-20671951,20672030-20672203 28 5.6
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 27 7.5
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 27 9.9
02_05_1162 - 34593101-34594624 27 9.9
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 318 ANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
A A+ +YD+I+VGGG+AGC LA L VL++E G P
Sbjct: 47 AETAAEEAYDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAP 90
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
P + YD+II+GGG+AGC LA L+E + VL++E G P
Sbjct: 38 PVMAYYDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSP 76
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 315 HA-NVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLF 479
HA + P SSY++I++GGG+AGC LA L+E + VL++E G P + +S + F
Sbjct: 44 HAQDAPLVSSYNYIVIGGGTAGCPLAATLSEHSR--VLLLERGGLPYANMSSEQHF 97
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 339 SYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARL 476
+YD+IIVGGG+AGC LA L++ + VL++E G P N + L
Sbjct: 49 AYDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHL 92
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3
Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
P S YD+IIVGGG+AGC LA L++ + VL++E G P
Sbjct: 44 PQVSYYDYIIVGGGTAGCPLAATLSQ--RFRVLLLERGGSP 82
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 339 SYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLFAYNFDLT 500
+YD+I+VGGG+AGC LA L+ + VL++E G P N + + ++ L+
Sbjct: 50 TYDYIVVGGGTAGCPLAATLS--LKYKVLLLERGGSPYGNRNVSYMENFHIGLS 101
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 306 YPAHA-NVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
+ HA + P S Y++I+VGGG+AGC LA L+E + VL++E G P
Sbjct: 44 FARHARDAPLVSYYNYIVVGGGTAGCPLAATLSERSR--VLLLERGGLP 90
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 213 ALFQVKILIPILEVIQLLI-IALSSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLA 389
AL + L+P E+++ + A +S G+ A A+ P D I GGG L
Sbjct: 86 ALRGSRYLLPAQELLREAVSAAAASARGGDDDDEAVASFPHDGKSTGIGGGGGGVQAKLL 145
Query: 390 NRLTEVANWSV 422
+ L+E++NW +
Sbjct: 146 SLLSEISNWFI 156
>04_04_1647 + 35032328-35033803
Length = 491
Score = 29.5 bits (63), Expect = 1.8
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 240 PILEVIQLLIIALSSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWS 419
P++ ++QLL++ L S I PLY VPAD+ + A LA R +A
Sbjct: 6 PLVVLLQLLLLPLLSTAITLPLYRNLPPVPADTDHPHHHPLSRLAAASLA-RAAHLARPR 64
Query: 420 VLMIEAGDDPPSIANSARLFAY-NFDLTAELG 512
+ PPS+ S +Y + T LG
Sbjct: 65 PRSRQGTAPPPSVRASLYPHSYGGYAFTVSLG 96
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 339 SYDFIIVGGGSAGCVLANRLTEV-----ANWSVLMIEAGDDPPSIANSARLF 479
SYD ++VG G AG A RL ++ + SV ++E G + + S +F
Sbjct: 2 SYDVVVVGAGPAGLAAAIRLKQLCRDADTDLSVCVLEKGSEVGAHVLSGNVF 53
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 448 GSSPASIISTDQLATSVSLLASTQPADPPP 359
G P +ISTD L + +A+T P PPP
Sbjct: 168 GQCPQEVISTD-LCLGLGPIAATAPLQPPP 196
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Frame = +3
Query: 330 ADSSYDFIIVGGGSAGCVL-------ANRLTEVANWSVLMIEAGDDP 449
+D YD + G G A + A L+ NW +++ G+DP
Sbjct: 215 SDGFYDLYVTGNGPASITMPSLKDLRAQSLSHRVNWEAVLVHRGEDP 261
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 333 DSSYDFIIVGGGSAGCVLA 389
+ YD I+VGGG AGC A
Sbjct: 102 EERYDVIVVGGGHAGCEAA 120
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 28.3 bits (60), Expect = 4.3
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = +3
Query: 225 VKILIPILEVIQLLIIALSSFEIGEP---LYPAHANVPADSSYDFIIVGGGSAGCVLANR 395
+++L+ + V+ +L A+ ++ + L N D F+ G A ++A +
Sbjct: 5 LEMLVQLAVVVTVLCAAVRAYTPADSYLFLCGTSGNATVDGR-TFVGDAGLPASVLMAPQ 63
Query: 396 LTEVANWSVLMIEAGDDPPSIANSARLFA--YNFDLTAELG 512
TE + + AGDD P++ SAR+F N+ +A+ G
Sbjct: 64 STEANMPANQVTGAGDDSPALYQSARVFTAPANYAFSAKPG 104
>07_03_0683 + 20671067-20671951,20672030-20672203
Length = 352
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 345 DFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
D ++VG GSAG A L++ + SV +IE P
Sbjct: 84 DVVVVGAGSAGLSCAYELSKDPSVSVAVIEQSVSP 118
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 454 LGGSSPASIISTDQLATSVSLLASTQPADPP 362
LG S +S+ S + ATSV S P++PP
Sbjct: 598 LGSSKESSLQSLQETATSVFAKKSEPPSEPP 628
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 448 GSSPASIISTDQLATSVSLLASTQPADPPPTIMKS 344
GSS A+ TD + S +A+ PA PP T+ S
Sbjct: 152 GSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPS 186
>02_05_1162 - 34593101-34594624
Length = 507
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 451 GGSSPASIISTDQLATSVSLLASTQPADPPP 359
G SSP S +TD S A+ Q A PPP
Sbjct: 5 GDSSPHSAAATDDAHHEGSEAAAAQAAPPPP 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,894
Number of Sequences: 37544
Number of extensions: 228813
Number of successful extensions: 606
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -