Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0891
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 31 0.82
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31) 30 1.1
SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46) 30 1.4
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41) 29 1.9
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 29 1.9
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06) 29 2.5
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) 29 2.5
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 342 YDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSI 458
YDFII GGG+AGC+LANRLT VLM+EAG + S+
Sbjct: 11 YDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSM 49
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 336 SSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAG 440
S +D++I G GSAGCVLANRL+ + VL++EAG
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAG 196
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 30.7 bits (66), Expect = 0.82
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 330 ADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 437
A +YD++++GGGS G A R E +V++ A
Sbjct: 47 AVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIEHA 82
>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
Length = 836
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 315 HANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 443
HAN + D I++GGG +G A L + L++EA D
Sbjct: 539 HANHTEELRADIIVIGGGISGLCAAKLLQQGHGVDTLVLEARD 581
>SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 354 IVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSA 470
++GGG GC A +L + N++V ++E S +++A
Sbjct: 21 VIGGGIGGCCSALQLAKTGNYTVFLLEKNSQLMSESSNA 59
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 345 DFIIVGGGSAGCVLANRLTEVANW-SVLMIEAGD 443
D II+G G +G + AN LTE + VL++EA D
Sbjct: 2108 DVIIIGAGVSGLIAANVLTEQDQYIKVLVLEACD 2141
>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
Length = 413
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/106 (25%), Positives = 40/106 (37%)
Frame = +3
Query: 126 TYXSEASLLLYLVRF*TLCTTHKMFFQAIALFQVKILIPILEVIQLLIIALSSFEIGEPL 305
TY S + L L R C + F+ +AL + + I + + G +
Sbjct: 10 TYTSNNTERLALARLVQNCDKSDLHFRNVALQSRQFFLQISNHSCVYYFIKNQLPGGVMM 69
Query: 306 YPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 443
D SYDF+ C+L+ LTE + V EAGD
Sbjct: 70 EKILRGTQNDKSYDFVHFNEIMKECLLSMGLTEPGSSVVKEKEAGD 115
>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 318 ANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIE 434
++VPA++ D +++GGGS G LT++ +V+++E
Sbjct: 103 SSVPAEA--DVVVIGGGSVGTSTLYHLTKMGVKNVILLE 139
>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
Length = 264
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 333 DSSYDFIIVGGGSAGCVLANRLTE 404
+S YD IIVGGG+AG A + E
Sbjct: 2 NSKYDIIIVGGGAAGFFTAINIAE 25
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 330 ADSSYDFIIVGGGSAGCVLANRLTEVANW 416
A YD I++GGGS G A NW
Sbjct: 665 ASYEYDLIVIGGGSGGLACAKNHIGSLNW 693
>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
Length = 410
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 336 SSYDFIIVGGGSAGCVLANRLTEVANWSVL 425
+ ++ IIVGGG AG LA +L + N +++
Sbjct: 45 NDFNVIIVGGGYAGITLAGKLDDYCNVTLI 74
>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
Length = 324
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 330 ADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLF 479
++SS F I G GCVLA L + W L+ G PP + N + F
Sbjct: 105 SNSSEAFDISIGVKQGCVLAPTLFNILLWFALVAHIG-CPPKLLNFIKSF 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,183
Number of Sequences: 59808
Number of extensions: 253691
Number of successful extensions: 571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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