Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0891
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    47   8e-06
Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    30   0.95 
AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical ...    30   0.95 
Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    28   3.9  
AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin r...    28   3.9  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    28   3.9  
U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...    28   5.1  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC024882-18|AAF60938.1|  392|Caenorhabditis elegans Hypothetical...    27   6.7  
AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical...    27   8.9  
AL032637-9|CAA21621.1|  108|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = +3

Query: 330 ADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAG 440
           A++    IIVG GSAGCVLANRLTE  +  VL+IEAG
Sbjct: 34  AENKPTHIIVGAGSAGCVLANRLTEDPSNRVLLIEAG 70


>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 348 FIIVGGGSAGCVLANRLTEV---ANWSVLMIEAGDDPPSIANSARLFAY 485
           +IIVGGG AG   A+++ ++   AN  V++I A     S+ N  ++  Y
Sbjct: 3   YIIVGGGIAGVSCASQMLQLERSANLEVIIISASSFVKSVENYQKIGQY 51


>AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical
           protein Y45G12B.3 protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 342 YDFIIVGGGSAGCVLANR-LTEVANWSVLMIE 434
           YD +IVGGG  GC  A + L E     V +IE
Sbjct: 26  YDLVIVGGGIVGCATARQLLIEKPQLKVALIE 57


>Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical
           protein F08A10.1c protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 451 GGSSPASIISTDQLATSVSLLASTQPADPPPTIMKS*LESAGT 323
           G S+P SI+   +L  +   L+   PA P PT   S + ++G+
Sbjct: 17  GSSAPKSILRAPRLTAAPKQLSFDVPASPTPTAKSSCVSTSGS 59


>Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical
           protein F08A10.1b protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 451 GGSSPASIISTDQLATSVSLLASTQPADPPPTIMKS*LESAGT 323
           G S+P SI+   +L  +   L+   PA P PT   S + ++G+
Sbjct: 17  GSSAPKSILRAPRLTAAPKQLSFDVPASPTPTAKSSCVSTSGS 59


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 342 YDFIIVGGGSAGCVLANRLTEVANWSVLMIEAG 440
           +D++++GGGS G   A R  E    SV +IE+G
Sbjct: 7   FDYLVIGGGSGGIASARRAREF-GVSVGLIESG 38


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 342 YDFIIVGGGSAGCVLANRLTEVANWSVLMIEAG 440
           +D++++GGGS G   A R  E    SV +IE+G
Sbjct: 21  FDYLVIGGGSGGIASARRAREF-GVSVGLIESG 52


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 DSSYDFIIVGGGSAGCVLANRLTEV 407
           D +YD I++GGGS G   A   + +
Sbjct: 170 DHTYDLIVIGGGSGGLAAAKEASRL 194


>AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin
           reductase homolog protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 DSSYDFIIVGGGSAGCVLANRLTEV 407
           D +YD I++GGGS G   A   + +
Sbjct: 28  DHTYDLIVIGGGSGGLAAAKEASRL 52


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 333 DSSYDFIIVGGGSAGCVLANRLTEV 407
           D +YD I++GGGS G   A   + +
Sbjct: 170 DHTYDLIVIGGGSGGLAAAKEASRL 194


>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 342 YDFIIVGGGSAGCVLANRLTEVA 410
           YD +IVGGG +G   A RL ++A
Sbjct: 51  YDVVIVGGGPSGLSAAIRLRQLA 73


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 297 EPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPP 452
           EP   AH++VP  +S         S G V+A R T V++ S        DPP
Sbjct: 89  EPSLMAHSSVPLSNSKSERRARSSSPGHVIAQRKTMVSSSSGTFSPPPLDPP 140


>AC024882-18|AAF60938.1|  392|Caenorhabditis elegans Hypothetical
           protein Y9C9A.16 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 279 SSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLT-EVANWSVLMIEAGDD 446
           S F+    +Y    +V     +  ++VGGG+ G  +A++ T ++ + S+ +IE  +D
Sbjct: 19  SHFQCKPMIYDQFNDVNRPKHFKLLVVGGGAGGLGIASKFTRKLPSGSLGIIEPLED 75


>AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical
           protein Y50E8A.6 protein.
          Length = 609

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 321 NVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 443
           ++  +  +D +++GGGSAG  +A    +       M+E GD
Sbjct: 56  SLKTEKRFDVLVIGGGSAGAGVALD-AQTRGLKTAMVEYGD 95


>AL032637-9|CAA21621.1|  108|Caenorhabditis elegans Hypothetical
           protein Y43F8C.9 protein.
          Length = 108

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 424 STDQLATSVSLLASTQPADPPPTIMKS 344
           +T    T+ +   +T P  PPPTI KS
Sbjct: 52  TTTTTTTTTTTTTTTPPPPPPPTIQKS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,908
Number of Sequences: 27780
Number of extensions: 192674
Number of successful extensions: 528
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)