Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0891
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored...    54   5e-08
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored...    51   6e-07
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    47   1e-05
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored...    46   1e-05
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored...    44   5e-05
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored...    43   2e-04
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored...    41   5e-04
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R...    40   8e-04
At5g11330.1 68418.m01323 monooxygenase family protein low simila...    34   0.072
At2g13440.1 68415.m01483 glucose-inhibited division family A pro...    31   0.67 
At1g57770.1 68414.m06554 amine oxidase family contains similarit...    29   2.7  
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    28   4.7  
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    28   4.7  
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    27   6.2  
At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id...    27   6.2  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    27   8.3  

>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 572

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +3

Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLFAYNFDLT 500
           P  S YD+II+GGG+AGC LA  L++  N SVL++E GD P +  N  RL A+   L+
Sbjct: 41  PTTSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGDSPYNNPNITRLSAFGAALS 96


>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 594

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 27/55 (49%), Positives = 39/55 (70%)
 Frame = +3

Query: 333 DSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLFAYNFDL 497
           DSSYD+I++GGG+AGC LA  L++  N+SVL++E G  P + AN +  F  NF +
Sbjct: 60  DSSYDYIVIGGGTAGCPLAATLSQ--NFSVLVLERGGVPFTNANVS--FLRNFHI 110


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +3

Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           P ++S+D+II+GGG+AGC LA  L++  N SVL++E G  P
Sbjct: 68  PKNASFDYIIIGGGTAGCALAATLSQ--NASVLVLERGGSP 106


>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 501

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +3

Query: 300 PLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP--PSIANSAR 473
           P     A   +  S+D+I+VGGG+AGC LA  L+E   +SVL+IE G  P    +    +
Sbjct: 2   PYMTTDAKEVSGKSFDYIVVGGGTAGCSLAATLSE--KYSVLVIERGGSPFGDPLVEERK 59

Query: 474 LFAYNFDLTAE 506
            F Y+   T E
Sbjct: 60  YFGYSLLNTDE 70


>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 503

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +3

Query: 339 SYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           S+D+I+VGGG+AGC LA  L+E   +SVL+IE G  P
Sbjct: 36  SFDYIVVGGGTAGCSLAATLSE--KYSVLVIERGGSP 70


>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 577

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +3

Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           P  S +D+II+GGG+AGC LA  L++  N +VL++E G  P
Sbjct: 41  PKLSHFDYIIIGGGTAGCALAATLSQ--NATVLVLERGGSP 79


>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 586

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +3

Query: 327 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           P  + +D+II+GGG++GC LA  L++  N SVL++E G  P
Sbjct: 41  PMFARFDYIIIGGGTSGCALAATLSQ--NASVLVLERGGAP 79


>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
           (R)-oxynitrilase, putative similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|52707];
           contains Pfam protile PF00732 GMC oxidoreductase
          Length = 552

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 330 ADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           ++  YD+IIVGGG+AGC LA  L++  ++ VL++E G  P
Sbjct: 50  SEDYYDYIIVGGGTAGCPLAATLSQ--SFRVLLLERGGVP 87


>At5g11330.1 68418.m01323 monooxygenase family protein low
           similarity to 2,6-dihydroxypyridine 3-hydroxylase (DHPH)
           [GI:14495302] [Arthrobacter nicotinovorans]; contains
           Pfam profile PF01360: Monooxygenase
          Length = 408

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 351 IIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPP 452
           IIVGG  AG   A+ LT +A W VL++E   +PP
Sbjct: 9   IIVGGSIAGLSCAHSLT-LACWDVLVLEKSSEPP 41


>At2g13440.1 68415.m01483 glucose-inhibited division family A
           protein similar to GidA from Pseudomonas syringae
           [GI:10764670]; contains Pfam profile PF01134 Glucose
           inhibited division protein A
          Length = 723

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 330 ADSSYDFIIVGGGSAGCVLA 389
           +DS+YD I+VG G AGC  A
Sbjct: 69  SDSTYDVIVVGAGHAGCEAA 88


>At1g57770.1 68414.m06554 amine oxidase family contains similarity
           to carotenoid isomerase [Lycopersicon esculentum]
           GI:19550437, phytoene dehydrogenase (PDH1) GI:433144
           from (Cercospora nicotianae); contains Pfam profile
           PF01593 amine oxidase, flavin-containing
          Length = 574

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 345 DFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLFAYNFD 494
           D +++G G  G      L    +  V+++E+ D P   A+S  +  Y FD
Sbjct: 54  DVVVIGSGIGGLCCGALLARY-DQDVIVLESHDHPGGAAHSFEIKGYKFD 102


>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 300 PLYPAHANVPADSSYDFI-IVGGGSAGCVL 386
           P YP+H +VP   S DFI  + G SAG V+
Sbjct: 356 PGYPSHGSVPVVVSPDFIPQLSGPSAGSVV 385


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 300 PLYPAHANVPADSSYDFI-IVGGGSAGCVL 386
           P YP+H +VP   S DFI  + G SAG V+
Sbjct: 356 PGYPSHGSVPVVVSPDFIPQLSGPSAGSVV 385


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 345 DFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDP 449
           D ++VG GSAG   A  +++  N  V +IE    P
Sbjct: 85  DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 119


>At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1)
            identical to GI:2392895
          Length = 1196

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 398  HRSRQLVCADDRSWRRPS 451
            H    + C DDR+WRRP+
Sbjct: 1130 HLKVAVACLDDRAWRRPT 1147


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 321 NVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSARLFAYNFDLT 500
           N+   SS   +++G G+ GC +A  L      ++  ++ G    +++N  R   YNF+  
Sbjct: 351 NLNVLSSVKCLLLGAGTLGCQVARTLMGWGIRNITFVDYG--KVAMSNPVRQSLYNFEDC 408

Query: 501 AELGIFR 521
              G F+
Sbjct: 409 LGRGEFK 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,173,472
Number of Sequences: 28952
Number of extensions: 179031
Number of successful extensions: 459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)