Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0889
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      281   3e-76
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)          122   1e-28
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           97   6e-21
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   58   5e-09
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           54   8e-08
SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)            40   0.002
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)                    29   3.3  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   4.4  
SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)          28   5.8  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  281 bits (689), Expect = 3e-76
 Identities = 127/135 (94%), Positives = 129/135 (95%)
 Frame = +3

Query: 102 SKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRXXEYGGF 281
           S+PG NVQLTE EI+GLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLR  EYGGF
Sbjct: 22  SRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGF 81

Query: 282 PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENXFLLRGNHECASINRIYGXYDECK 461
           PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN FLLRGNHECASINRIYG YDECK
Sbjct: 82  PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK 141

Query: 462 RRYNIKLWKTFTDCF 506
           RRYNIKLWKTFTDCF
Sbjct: 142 RRYNIKLWKTFTDCF 156



 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 505 FNCLPVAAIVDXKIF 549
           FNCLPVAAI+D KIF
Sbjct: 156 FNCLPVAAILDEKIF 170



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +2

Query: 44  DTDELNIDNVIKKLLKVRGEQ 106
           + ++LN+D++I +LL+VRG +
Sbjct: 3   EPEKLNVDSIISRLLEVRGSR 23


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score =  122 bits (295), Expect = 1e-28
 Identities = 57/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
 Frame = +3

Query: 126 LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRXXEYGGFPPESNYLF 305
           L E ++K LC    E+ L +  +  + +P+ +CGDIHGQ+YDL      GG  P ++Y+F
Sbjct: 17  LPENDLKKLCDYVCELLLEESNVQPVSSPVTVCGDIHGQFYDLEELFRTGGQVPNTSYVF 76

Query: 306 LGDYVDRGKQSLETICLLLAYKIKYPENXFLLRGNHECASINRIYGXYDECKRRY-NIKL 482
           +GD+VDRG  SLET   LL  K K+P+   LLRGNHE   I ++YG YDEC+ +Y N   
Sbjct: 77  MGDFVDRGYYSLETFTRLLTLKAKWPDRITLLRGNHESRQITQVYGFYDECQSKYGNANA 136

Query: 483 WKTFTDCFQL 512
           W+     F L
Sbjct: 137 WRYCCKVFDL 146


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score =  102 bits (244), Expect = 2e-22
 Identities = 46/76 (60%), Positives = 57/76 (75%)
 Frame = +3

Query: 108 PGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRXXEYGGFPP 287
           PG  VQL E +I+ +C  SREIFL QP+LLE+ AP+ I GDIHGQY DLLR  +  G+PP
Sbjct: 26  PGKQVQLPEAQIRQICQVSREIFLQQPMLLEIGAPINIFGDIHGQYEDLLRHFDKLGYPP 85

Query: 288 ESNYLFLGDYVDRGKQ 335
             +Y+FLGDYVDR K+
Sbjct: 86  NESYIFLGDYVDRPKR 101


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 40/83 (48%), Positives = 60/83 (72%)
 Frame = +3

Query: 123 QLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRXXEYGGFPPESNYL 302
           QLTE ++K LC K++EI   +  + E++ P+ +CGD+HGQ++DL+     GG  P++NYL
Sbjct: 23  QLTEAQVKTLCEKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 82

Query: 303 FLGDYVDRGKQSLETICLLLAYK 371
           F+GDYVDRG  S+ET+ LL+  K
Sbjct: 83  FMGDYVDRGYYSVETVTLLVTLK 105


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 44/90 (48%), Positives = 57/90 (63%)
 Frame = +3

Query: 171 IFLSQPILLELEAPLKICGDIHGQYYDLLRXXEYGGFPPESNYLFLGDYVDRGKQSLETI 350
           I   +  +LE++AP+ +CGDIHGQ+YDL++  E GG P  + YLFLGDYVDRG  S+E  
Sbjct: 69  ILRKEKTMLEVDAPITVCGDIHGQFYDLVKLFEVGGSPATTRYLFLGDYVDRGYFSIE-- 126

Query: 351 CLLLAYKIKYPENXFLLRGNHECASINRIY 440
           CL       Y    FLLRGNHEC  +   +
Sbjct: 127 CL-------YTNTLFLLRGNHECRHLTEYF 149


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
 Frame = +3

Query: 150 LCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLL----RXXEYGGFPPESNYLFLGDY 317
           +C   RE+ + +P +L +++P+ + GD+HG + DL+         G     SN+LFLGDY
Sbjct: 652 VCRSLREVVMEEPRMLRVQSPVYVLGDLHGNFRDLVCFEKLLWRMGPVLTPSNFLFLGDY 711

Query: 318 VDRGKQSLE 344
           VDRG+  +E
Sbjct: 712 VDRGENGVE 720


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 276 GFP-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENXFLLRGNHE 416
           G P PE+ Y+F GD VDRG +S+E   +L A+ I YP   ++ RGNHE
Sbjct: 2   GLPSPENPYIFNGDLVDRGPRSIEICIILFAFTILYPNGVYINRGNHE 49


>SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)
          Length = 250

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 219 ICGDIHGQYYDLLRXXEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENXFL 398
           + GDIHG    L +  E          +FLGDYVD   +S  TI  L+  +I    +   
Sbjct: 7   VFGDIHGGLRALQQLFERAEITINDKLIFLGDYVDGWSESAATIQFLI--EIAEKHDCIF 64

Query: 399 LRGNHE 416
           ++GNH+
Sbjct: 65  IKGNHD 70


>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 366 YKIKYPENXFLLRGNHECASINRIYGXYDECKRRYNIKLWKTFTDCFQLSSR 521
           Y  +Y E   +     +C  ++R+ G   + +RRY+++ +KT T  ++  SR
Sbjct: 90  YCTQYDETTGICPSGDDCPYLHRVAG---DVERRYHLRYYKTATCVYETDSR 138


>SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 493

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 321 DRGKQSLETICLLLAYKIKYPENXFLLRGNHECA 422
           D  KQS  T+C+LL Y+ KY E  + +  N EC+
Sbjct: 444 DTTKQSRRTVCMLL-YRAKYIEGCY-ISVNTECS 475


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 2    TIFRTHTIYPMADRDTDELN-IDNVIKKLLKVRG---EQAWYECSVDGNRN 142
            T F+ HT++P+ +    EL+     ++  LK +G   E+ W EC  D   N
Sbjct: 906  TCFQPHTVHPLTNTTMQELHEHTRAVELRLKAQGYNYEEVW-ECQFDAQLN 955


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 289 SPTISSLETMWTVASSPWKQYACSSPTRLNIPRIXFFYAETTS-VPASIGFMGXTMSAKG 465
           S T S ++    V S+P+     SSP   N P+I   ++ T S VP+   + G  M+   
Sbjct: 69  SVTSSPVQPKPVVTSTPYSGSDLSSPDENNGPQITLPHSNTISGVPSHHSYPGSAMTPPH 128

Query: 466 GIT 474
           G T
Sbjct: 129 GHT 131


>SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)
          Length = 812

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 278 LPSGVQLSLPWRLCGPWQAVLGNNMPAPRLQ 370
           L S +++S+P+R+C  +  +LGN + A  L+
Sbjct: 20  LKSSIRMSVPFRICLLFTFILGNPLKATSLE 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,970
Number of Sequences: 59808
Number of extensions: 327567
Number of successful extensions: 644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)