Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0889
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.22 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.22 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   0.52 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 269 VWWLPSGVQLSLPWRLCG-PW 328
           +++L   +++ LPWR CG PW
Sbjct: 123 LFYLLVSLRIDLPWRTCGNPW 143



 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +1

Query: 307 LETMWTVASSPWKQYACSSPT 369
           ++  W    +PW    C +PT
Sbjct: 132 IDLPWRTCGNPWNTRYCLTPT 152


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 269 VWWLPSGVQLSLPWRLCG-PW 328
           +++L   +++ LPWR CG PW
Sbjct: 176 LFYLLVSLRIDLPWRTCGNPW 196



 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +1

Query: 307 LETMWTVASSPWKQYACSSPT 369
           ++  W    +PW    C +PT
Sbjct: 185 IDLPWRTCGNPWNTRYCLTPT 205


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect(2) = 0.52
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 327 HGPHSLQGRDSWTPEGS 277
           HG H L G  S  P GS
Sbjct: 138 HGLHGLHGLSSSAPTGS 154



 Score = 21.4 bits (43), Expect(2) = 0.52
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 399 KEXNSRDI*SCRRGAGILFPRTACHGPHSLQG 304
           KE  SR+    RR    L  +T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,503
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)