Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0887
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 284 5e-77
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 279 1e-75
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 279 1e-75
SB_56| Best HMM Match : Actin (HMM E-Value=0) 278 4e-75
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 277 8e-75
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 9e-29
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 95 6e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 84 9e-17
SB_54| Best HMM Match : Actin (HMM E-Value=0) 81 8e-16
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 58 7e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 4e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 37 0.018
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.68
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.68
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.90
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.90
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 1.2
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 1.2
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.6
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.6
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.6
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.6
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 30 2.1
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34) 29 3.6
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 3.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 3.6
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 29 4.8
SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4) 29 4.8
SB_42120| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 28 6.3
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 284 bits (696), Expect = 5e-77
Identities = 128/131 (97%), Positives = 131/131 (100%)
Frame = +1
Query: 100 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 279
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 280 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 459
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 460 TQIMFETFNTP 492
TQIMFETFN+P
Sbjct: 121 TQIMFETFNSP 131
Score = 98.3 bits (234), Expect = 5e-21
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PAMYV IQAVLSLYASGRTTGIV+DS DGV+HTVPIYEGYALPHAIL LDL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 279 bits (685), Expect = 1e-75
Identities = 127/131 (96%), Positives = 130/131 (99%)
Frame = +1
Query: 100 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 279
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 280 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 459
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 460 TQIMFETFNTP 492
TQIMFETFN+P
Sbjct: 121 TQIMFETFNSP 131
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PAMYV IQAVLSLYASGRTTGIV+DS DGV+HTVPIYEGYALPHAI+ LDL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDL 181
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 279 bits (685), Expect = 1e-75
Identities = 125/131 (95%), Positives = 130/131 (99%)
Frame = +1
Query: 100 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 279
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 280 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 459
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 460 TQIMFETFNTP 492
TQIMFETFN+P
Sbjct: 121 TQIMFETFNSP 131
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/43 (86%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYE--GYA 613
PAMYV IQAVLSLYASGRTTGIV+DS DGVSHTVPIYE GY+
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 278 bits (681), Expect = 4e-75
Identities = 126/129 (97%), Positives = 129/129 (100%)
Frame = +1
Query: 106 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 285
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 286 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 465
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 466 IMFETFNTP 492
IMFETFN+P
Sbjct: 122 IMFETFNSP 130
Score = 98.3 bits (234), Expect = 5e-21
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PAMYV IQAVLSLYASGRTTGIV+DS DGV+HTVPIYEGYALPHAIL LDL
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 277 bits (678), Expect = 8e-75
Identities = 125/129 (96%), Positives = 129/129 (100%)
Frame = +1
Query: 106 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 285
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 286 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 465
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 466 IMFETFNTP 492
IMFETFN+P
Sbjct: 122 IMFETFNSP 130
Score = 98.3 bits (234), Expect = 5e-21
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PAMYV IQAVLSLYASGRTTGIV+DS DGV+HTVPIYEGYALPHAIL LDL
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 1e-46
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +1
Query: 106 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 285
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 286 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 372
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PAMYV IQAVLSLYASGRTTGIV+DS DGV+HTVPIYEGYALPHAI+ LDL
Sbjct: 93 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDL 143
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 124 bits (298), Expect = 9e-29
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Frame = +1
Query: 118 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 291
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 292 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 468
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 469 MFETF 483
MFE +
Sbjct: 127 MFENY 131
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +2
Query: 497 MYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
+Y+ IQAVL+LYA G TG+V+DS DGV+H P+YEG+ALPH LD+
Sbjct: 136 VYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDI 184
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/51 (86%), Positives = 46/51 (90%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PA+YV IQAVLSLYASGRTTG+V DS DGVSH VPIYEGYALPHAIL LDL
Sbjct: 9 PAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDL 59
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 84.2 bits (199), Expect = 9e-17
Identities = 34/51 (66%), Positives = 47/51 (92%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
PA+++ +QAVLSLYA+GRTTG+VLD+ DGVSH+VPIYEG+A+PH+I+ D+
Sbjct: 156 PALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDI 206
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1
Query: 400 EHPVLLTEAPLNPKANREKMTQIMFETFNTP 492
+HPVLLTEAPLNP+ NREK ++ FETFN P
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVP 156
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
P MYV +QAV++LYASGRTTG V D DGVSHTVP+Y+GY LPHA +DL
Sbjct: 2175 PCMYVAVQAVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDL 2225
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +1
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 492
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVP 2175
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 225
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 109 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 225
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 489
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 490 P 492
P
Sbjct: 63 P 63
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +2
Query: 491 PAMYVGIQAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAIL 631
PA ++ +VL+ +A+GR+ G+V+DS + VP+++GY L AI+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIV 109
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 94 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 264
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 265 GDEAQSKRGILTL 303
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +2
Query: 512 QAVLSLYASGRTTGIVLDSRDGVSHTVPIYEGYALPHAILXLDL 643
Q LSLYASG T G+ L S + IYEG+ L H + L++
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEI 810
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 238 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 417
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 548 TGIVLDSRDGVSHTVPI 598
TG V+DS DGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 112 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 291
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 292 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 381
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 222 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 106
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 548 TGIVLDSRDGVSHTVPIYEGYALPHAI 628
TG V+DS DGV+H +P+ EGY + I
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCI 88
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 301 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 453
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 197 GNTARGASSPAKPALHIPEPLSTT 126
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.68
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 193 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 251
Query: 168 CETGLAHT 145
CET L T
Sbjct: 252 CETQLVPT 259
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 197 GNTARGASSPAKPALHIPEPLSTT 126
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.90
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 251 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 309
Query: 168 CETGLAHT 145
CET L T
Sbjct: 310 CETQLVLT 317
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.90
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 71 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 129
Query: 168 CETGLAHT 145
CET L T
Sbjct: 130 CETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.90
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 105 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 163
Query: 168 CETGLAHT 145
CET L T
Sbjct: 164 CETQLVLT 171
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 388 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 446
Query: 168 CETGLAHT 145
CET L T
Sbjct: 447 CETQLVLT 454
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 229 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 287
Query: 168 CETGLAHT 145
CET L T
Sbjct: 288 CETQLVLT 295
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C ++LSH + H M D +HG RS S
Sbjct: 153 VVPVFKKSSKDNPENYRPISLTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFS 211
Query: 168 CETGLAHT 145
CET L T
Sbjct: 212 CETQLVLT 219
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 210 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 268
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 269 SIFQHGFRQALSCETQLVLT 288
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 197 GNTARGASSPAKPALHIPEPLSTT 126
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1609 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1667
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 1668 SIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 637 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 695
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 696 SIFQHGFRQALSCETQLVLT 715
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1047 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1105
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 1106 SIFQHGFRQALSCETQLVLT 1125
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 372 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 205
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 204 DRGEHGARSIISCETGLAHT 145
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -2
Query: 285 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 121
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 120 GNFFVAHLELVK 85
G V L+ K
Sbjct: 521 GQVDVLLLDFQK 532
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 279 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 145
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)
Length = 272
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 435 PQGQQREDDPDHVRNIQHAPPCTLASKPCSRCTRPV 542
P+G E DP V+ PP T A P R PV
Sbjct: 59 PRGTAPEPDPPLVQRQSQIPPWTRARSPVDRARSPV 94
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 204 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 262
Query: 168 CETGLAHT 145
CET L T
Sbjct: 263 CETQLVLT 270
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 345 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 169
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 2 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 60
Query: 168 CETGLAHT 145
CET L T
Sbjct: 61 CETQLVLT 68
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 382 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPRHVR 504
L+ APE P+ EAP PK + ++ Q + TPR V+
Sbjct: 330 LKKAPEHKPLDEVEAPQFPKLHHVELPQTEKKVDETPRFVQ 370
>SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4)
Length = 249
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 397 EEHPVLLTEAPLNPKANREKMTQIMFE-TFN-TPRHVRWHPSRAL 525
+ H V E L P ++ + ++E T N TP H+RWHP+ A+
Sbjct: 4 QPHHVHTVEQSL-PGSDDSSIDNCIYEYTKNKTPHHIRWHPADAI 47
>SB_42120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 509 IQAVLSLYASGRTTGIVLDSRDGVSHTVP 595
++A LS++ +GRT ++L SR SH+ P
Sbjct: 4 LRACLSVWMAGRTPNLMLQSRTDDSHSPP 32
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 197 GNTARGASSPAKPALHIPEPLSTT 126
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 197 GNTARGASSPAKPALHIPEPLSTT 126
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 456 DDPDHVRNIQHAPPCTLASKPCSRCTRP 539
D PD I+HAPP T+ + P ++ P
Sbjct: 759 DLPDTANEIEHAPPTTVINPPQAKPAEP 786
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,016
Number of Sequences: 59808
Number of extensions: 577310
Number of successful extensions: 1708
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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