Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3A948 Cluster: Putative uncharacterized protein; n=4; ...    36   0.47 
UniRef50_Q4J9P2 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q82BL8 Cluster: Putative ABC transporter ATP-binding pr...    33   5.8  
UniRef50_A7E4K4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q5LD24 Cluster: Putative uncharacterized protein; n=1; ...    32   7.6  
UniRef50_Q1D2N6 Cluster: Putative uncharacterized protein; n=1; ...    32   7.6  
UniRef50_A0GGL9 Cluster: Transcriptional regulator, IclR family;...    32   7.6  
UniRef50_Q6FNM9 Cluster: Candida glabrata strain CBS138 chromoso...    32   7.6  

>UniRef50_A3A948 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 545

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
 Frame = -1

Query: 484 RXXVQDLFSVEVFVITXSLXSQRAVGSLVATAHLPVHHYIRMTYMASLLLAVQVASDVLE 305
           R  V   F++ + V + SL S+  VG + +TA    +H +R+   A +   V  A     
Sbjct: 257 RPAVDPQFNLTLRVASRSLLSRACVG-VSSTAVAVSYHGVRLA-SAPVAPRVCAARRKSA 314

Query: 304 GIGPFESVEYSVKVPTERA---------REGFVFRTRH-RAPGGAATQSSR-PAPIQRHF 158
             GPF +   SV++P  RA         R G V R  H RAPGG   Q+ R    +    
Sbjct: 315 DAGPFVAWGSSVRLPGVRAGQPRRGHEERRGGVRRRAHGRAPGGVQGQAGRGRGRLAGSV 374

Query: 157 EFSPDLSGRDSSYRSNINMFHEYY 86
              P  +G   +   N+    +YY
Sbjct: 375 RLDPRGNGCGGAAHGNVKRLAKYY 398


>UniRef50_Q4J9P2 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus acidocaldarius|Rep: Putative uncharacterized
           protein - Sulfolobus acidocaldarius
          Length = 174

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 189 LWVAAPPGARCRVLNTNPSRALSVGTLTEYSTLSKGPMPSS 311
           LWV  PPG + R+++  P+ AL    L  ++  +  P P +
Sbjct: 77  LWVPPPPGIKARLISGCPNSALEEAILISHAIANSSPPPKA 117


>UniRef50_Q82BL8 Cluster: Putative ABC transporter ATP-binding
           protein; n=1; Streptomyces avermitilis|Rep: Putative ABC
           transporter ATP-binding protein - Streptomyces
           avermitilis
          Length = 613

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -1

Query: 448 FVITXSLXSQRAVGSLVATAHLPVHHYIRMTYMASLLLAVQVASDVLE-GIGPFESVEYS 272
           F+I   +   R  G   +   L V   +  +Y+   L +V  A  +++ G+G ++ +E +
Sbjct: 265 FLIVLVIGGLRVNGHANSLGDL-VAFLLYASYLVLPLSSVFRAVGLIQRGMGAYQRIEQA 323

Query: 271 VKVPTERAREGFVFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLS 137
           + +P E ++E    R R R P        +PA   R   F  D S
Sbjct: 324 LSLPAEPSQETPTVRARTREPARQTVSYEKPALALRDIGFGYDPS 368


>UniRef50_A7E4K4 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 538

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 215 PVSSPEHKPFPRPLSGNFDRIFNAFERTNAFE----YVRSNLDGKEEARHVGH-ADVVVN 379
           P SS EH P P P        +N  +R +  E    Y R N   K   R++    DV +N
Sbjct: 376 PPSSNEHSPIPNPERSFSPPAYNLAQRLDRKEGATFYNRVNAQNKRMNRNIDRDRDVDIN 435

Query: 380 RKMSSXYER 406
           R +++ Y R
Sbjct: 436 RDITTSYAR 444


>UniRef50_Q5LD24 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis NCTC 9343|Rep: Putative
           uncharacterized protein - Bacteroides fragilis (strain
           ATCC 25285 / NCTC 9343)
          Length = 732

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 236 KPFPRPLSGNFDRIFNAFERTNAFEYVRSNLDGKEEAR 349
           KPF   LS N  + +  +   + F YVR+NL G  EAR
Sbjct: 364 KPFGHVLSSNTAKGYLTYSLWDGFYYVRNNLTGVREAR 401


>UniRef50_Q1D2N6 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 661

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +3

Query: 168 CIGAGRLLWV---AAPPGARCRVLNTNPSRALSVGTLTEYSTLSKGPMPSSTSEATWT 332
           C+  G LLW    A  P     V N NP RA+      + + L K   P S    TWT
Sbjct: 134 CVACG-LLWEVQSADAPDEAAAVANANPRRAVIALGAADLTALRKAMKPHSLDARTWT 190


>UniRef50_A0GGL9 Cluster: Transcriptional regulator, IclR family;
           n=5; Burkholderiaceae|Rep: Transcriptional regulator,
           IclR family - Burkholderia phytofirmans PsJN
          Length = 254

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 138 LRSGENSKWRCIGAGRLLWVAAPPGARCRVLNTNPSRALSVGTLTEYSTLSK 293
           L+ G +    C  +G+LL    P   R RV+ T P R  S  T+T+   L K
Sbjct: 130 LQPGSHVPLHCSASGKLLLSFLPKDRRERVIETLPLRGYSERTITDRDALRK 181


>UniRef50_Q6FNM9 Cluster: Candida glabrata strain CBS138 chromosome
           J complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome J complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 1068

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -1

Query: 373 HYIRMTYMASLLLAVQ---VASDVLEGIGPFESVEYSVKVPTERAREGFVFRTRHRAPGG 203
           HY+++T   SL  A++   ++ + +     F+  ++ +    ++     +   +H  PGG
Sbjct: 45  HYLQITDQGSLTHAIETPIISKEFVGATSGFKEPKHPIIKHLQKCGVRLLSANQHSQPGG 104

Query: 202 AATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINM 101
             T  S+P PI      +P+ +     Y   +N+
Sbjct: 105 QQTYQSQPLPIIEVIARNPNATKDMKVYLRIVNL 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,315,240
Number of Sequences: 1657284
Number of extensions: 10365333
Number of successful extensions: 30536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30528
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)