Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    25   0.33 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.1  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 143 PQRARLVISKQHKYVP*ILL 84
           P + +LV+S  HKY P IL+
Sbjct: 132 PPQGQLVLSSMHKYQPRILI 151


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 234  CSGLDTGPQEVRLPRAVGPHRYSA 163
            C G     Q+ +LP+  GP  YSA
Sbjct: 1255 CVGRKQLAQKYQLPKMGGPQPYSA 1278


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 179 GPTALGSRTSWGPVSSPE 232
           GP    +  SW P+++P+
Sbjct: 421 GPLLTSALASWSPLTNPK 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,141
Number of Sequences: 336
Number of extensions: 2333
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)