Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    29   0.45 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   9.7  

>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 289 ESVEYSVKVPTERAREGFVFRTRHRAPGGAATQSSRPAPIQRHFE 155
           E++   +KVPTER RE  V  +        A+ SS+P P +R F+
Sbjct: 3   ETLVLHLKVPTERFRE--VLSSLKEKQNFTASPSSQPKPQERPFQ 45


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 228 LNTNPSRALSVGTLTEYSTLSKGPMPSSTSEATWT 332
           L+++ SR +S  +  EY+T    P  SST+ ++ T
Sbjct: 796 LSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSST 830


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 179 GPTALGSRTSWGPVSSPEHKPFPRPLSGN 265
           G  A GSR S     SP+HK   +P S N
Sbjct: 814 GKHASGSRNSISSTKSPQHKLSDQPRSRN 842


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 324 LLRTYSKALVLSKALNILSKFPLRG 250
           L++ Y     L+K  N+L KF LRG
Sbjct: 466 LIQVYEGERTLTKDNNLLGKFDLRG 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,450
Number of Sequences: 5004
Number of extensions: 39503
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)