BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0886 (550 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_1103 - 8744873-8745724 31 0.61 03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 29 1.8 07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 2.4 05_04_0364 + 20658219-20658416,20658475-20658543 29 2.4 05_03_0616 - 16227467-16228321 28 4.3 04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 28 4.3 11_06_0196 + 21144094-21144483 27 9.9 06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 27 9.9 05_03_0437 - 14012632-14012838 27 9.9 04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 27 9.9 >01_01_1103 - 8744873-8745724 Length = 283 Score = 31.1 bits (67), Expect = 0.61 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -1 Query: 205 GAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMFHEYYY 83 G +S+R A + ++ FS D GRD+ YR++ + H YYY Sbjct: 93 GRVLRSARDA-LSQYPRFSLD-GGRDAMYRASFSDHHHYYY 131 >03_05_0398 + 23790257-23790323,23791116-23791339,23792208-23792275, 23794738-23794980,23795108-23795237,23797235-23797954 Length = 483 Score = 29.5 bits (63), Expect = 1.8 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 167 LYRCGPTALGSRTSWGP-VSSPEHKPFPRPLSGNFDRIFNAFERTN 301 LYR G TA G+R+ W ++SP R L F + +A TN Sbjct: 436 LYRGGATACGARSIWDDMIASPARADIQRELREAFRSVEHAPPNTN 481 >07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223, 19536588-19536674,19537545-19537613,19537702-19538710, 19539217-19539365,19539453-19540487,19540488-19541003 Length = 1024 Score = 29.1 bits (62), Expect = 2.4 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = -1 Query: 346 SLLLAVQVASDVLEGIGPFESVEYSVKV------PTERAREGFVFRTRHRAPGGAATQSS 185 SLL + ++V+ GP ES E ++ P +R+ E HRAPG A Sbjct: 609 SLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEAPSLHENHRAPGSVAKTKR 668 Query: 184 RPA 176 P+ Sbjct: 669 APS 671 >05_04_0364 + 20658219-20658416,20658475-20658543 Length = 88 Score = 29.1 bits (62), Expect = 2.4 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -1 Query: 235 VFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMF 98 V ++RH P A QS+RP + P SGR SYR+ N++ Sbjct: 18 VMKSRH--PTRIA-QSARPTQLPETLTLQPGRSGRPVSYRTGRNLY 60 >05_03_0616 - 16227467-16228321 Length = 284 Score = 28.3 bits (60), Expect = 4.3 Identities = 18/74 (24%), Positives = 29/74 (39%) Frame = -1 Query: 298 GPFESVEYSVKVPTERAREGFVFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSY 119 GP S + EG RH++ Q ++P P+ + + LS +S Sbjct: 18 GPSSSASAPAPAASSNEEEG-----RHQSQAQQQVQEAQPQPLAQQAPAAAGLSRYESQK 72 Query: 118 RSNINMFHEYYYQH 77 R + N F +Y H Sbjct: 73 RRDWNTFLQYLRNH 86 >04_04_0329 + 24449574-24449633,24450261-24450320,24450510-24450562, 24450913-24450973,24451481-24451666,24451877-24451984, 24452196-24453418,24453571-24454405 Length = 861 Score = 28.3 bits (60), Expect = 4.3 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -2 Query: 357 PTWRASSLPSKLLRTYSKALVLSKALNILSKFPLRGRGKGLCSGLDTGPQEVRLPRAVGP 178 P+ + SL S + + V+ K+++ + F LR + KGL + P+E+R P ++ Sbjct: 295 PSCSSRSLSSSI-DLHGNGHVIEKSISRVGSFNLR-QIKGLSGSMPLPPEELRCPISLQL 352 Query: 177 HRYSAILSSHQT 142 I++S QT Sbjct: 353 MHDPVIIASGQT 364 >11_06_0196 + 21144094-21144483 Length = 129 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 93 SWNIFMLLRYDESRP-LRSGENSKWRCIGAGR 185 SW + + E R R+GE + WR +G GR Sbjct: 29 SWRSTTMAKQAEERDGCRAGEGASWRRVGRGR 60 >06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510, 11064598-11064816,11065301-11065429,11066502-11068031, 11068654-11069013,11069086-11069205,11069727-11069897, 11070022-11070180,11070327-11070452,11070660-11070968 Length = 1366 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -1 Query: 415 AVGSLVATAHLPVHHYIRMTYMASLLLAVQVASDVLEG 302 A+ VATAH P+ +R T ++ + +AS++L+G Sbjct: 1152 AIRQQVATAHTPLAQTLRETIASASSINQGLASELLDG 1189 >05_03_0437 - 14012632-14012838 Length = 68 Score = 27.1 bits (57), Expect = 9.9 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +3 Query: 180 GRLLWVAAPPGARCR 224 GR LW+ PP RCR Sbjct: 54 GRKLWIELPPALRCR 68 >04_03_0435 + 15902356-15902574,15902680-15902777,15905100-15905163, 15906707-15907045 Length = 239 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 Query: 206 SWGPVSSPEHKPFPRPLSGNFDRIFNAFERTN 301 S G + EHK PR GN ++ FER N Sbjct: 117 SCGILKGKEHKLIPRFQPGNIEKNAEIFERVN 148 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,230,831 Number of Sequences: 37544 Number of extensions: 301484 Number of successful extensions: 960 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 960 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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