Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0886
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1103 - 8744873-8745724 31 0.61
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 29 1.8
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 2.4
05_04_0364 + 20658219-20658416,20658475-20658543 29 2.4
05_03_0616 - 16227467-16228321 28 4.3
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 28 4.3
11_06_0196 + 21144094-21144483 27 9.9
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 27 9.9
05_03_0437 - 14012632-14012838 27 9.9
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 27 9.9
>01_01_1103 - 8744873-8745724
Length = 283
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 205 GAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMFHEYYY 83
G +S+R A + ++ FS D GRD+ YR++ + H YYY
Sbjct: 93 GRVLRSARDA-LSQYPRFSLD-GGRDAMYRASFSDHHHYYY 131
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 167 LYRCGPTALGSRTSWGP-VSSPEHKPFPRPLSGNFDRIFNAFERTN 301
LYR G TA G+R+ W ++SP R L F + +A TN
Sbjct: 436 LYRGGATACGARSIWDDMIASPARADIQRELREAFRSVEHAPPNTN 481
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -1
Query: 346 SLLLAVQVASDVLEGIGPFESVEYSVKV------PTERAREGFVFRTRHRAPGGAATQSS 185
SLL + ++V+ GP ES E ++ P +R+ E HRAPG A
Sbjct: 609 SLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEAPSLHENHRAPGSVAKTKR 668
Query: 184 RPA 176
P+
Sbjct: 669 APS 671
>05_04_0364 + 20658219-20658416,20658475-20658543
Length = 88
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 235 VFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMF 98
V ++RH P A QS+RP + P SGR SYR+ N++
Sbjct: 18 VMKSRH--PTRIA-QSARPTQLPETLTLQPGRSGRPVSYRTGRNLY 60
>05_03_0616 - 16227467-16228321
Length = 284
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = -1
Query: 298 GPFESVEYSVKVPTERAREGFVFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSY 119
GP S + EG RH++ Q ++P P+ + + LS +S
Sbjct: 18 GPSSSASAPAPAASSNEEEG-----RHQSQAQQQVQEAQPQPLAQQAPAAAGLSRYESQK 72
Query: 118 RSNINMFHEYYYQH 77
R + N F +Y H
Sbjct: 73 RRDWNTFLQYLRNH 86
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -2
Query: 357 PTWRASSLPSKLLRTYSKALVLSKALNILSKFPLRGRGKGLCSGLDTGPQEVRLPRAVGP 178
P+ + SL S + + V+ K+++ + F LR + KGL + P+E+R P ++
Sbjct: 295 PSCSSRSLSSSI-DLHGNGHVIEKSISRVGSFNLR-QIKGLSGSMPLPPEELRCPISLQL 352
Query: 177 HRYSAILSSHQT 142
I++S QT
Sbjct: 353 MHDPVIIASGQT 364
>11_06_0196 + 21144094-21144483
Length = 129
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 93 SWNIFMLLRYDESRP-LRSGENSKWRCIGAGR 185
SW + + E R R+GE + WR +G GR
Sbjct: 29 SWRSTTMAKQAEERDGCRAGEGASWRRVGRGR 60
>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 415 AVGSLVATAHLPVHHYIRMTYMASLLLAVQVASDVLEG 302
A+ VATAH P+ +R T ++ + +AS++L+G
Sbjct: 1152 AIRQQVATAHTPLAQTLRETIASASSINQGLASELLDG 1189
>05_03_0437 - 14012632-14012838
Length = 68
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 180 GRLLWVAAPPGARCR 224
GR LW+ PP RCR
Sbjct: 54 GRKLWIELPPALRCR 68
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 206 SWGPVSSPEHKPFPRPLSGNFDRIFNAFERTN 301
S G + EHK PR GN ++ FER N
Sbjct: 117 SCGILKGKEHKLIPRFQPGNIEKNAEIFERVN 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,831
Number of Sequences: 37544
Number of extensions: 301484
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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