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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1103 - 8744873-8745724                                           31   0.61 
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922...    29   1.8  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    29   2.4  
05_04_0364 + 20658219-20658416,20658475-20658543                       29   2.4  
05_03_0616 - 16227467-16228321                                         28   4.3  
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505...    28   4.3  
11_06_0196 + 21144094-21144483                                         27   9.9  
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    27   9.9  
05_03_0437 - 14012632-14012838                                         27   9.9  
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051...    27   9.9  

>01_01_1103 - 8744873-8745724
          Length = 283

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 205 GAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMFHEYYY 83
           G   +S+R A + ++  FS D  GRD+ YR++ +  H YYY
Sbjct: 93  GRVLRSARDA-LSQYPRFSLD-GGRDAMYRASFSDHHHYYY 131


>03_05_0398 +
           23790257-23790323,23791116-23791339,23792208-23792275,
           23794738-23794980,23795108-23795237,23797235-23797954
          Length = 483

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 167 LYRCGPTALGSRTSWGP-VSSPEHKPFPRPLSGNFDRIFNAFERTN 301
           LYR G TA G+R+ W   ++SP      R L   F  + +A   TN
Sbjct: 436 LYRGGATACGARSIWDDMIASPARADIQRELREAFRSVEHAPPNTN 481


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -1

Query: 346 SLLLAVQVASDVLEGIGPFESVEYSVKV------PTERAREGFVFRTRHRAPGGAATQSS 185
           SLL  +   ++V+   GP ES E   ++      P +R+ E       HRAPG  A    
Sbjct: 609 SLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEAPSLHENHRAPGSVAKTKR 668

Query: 184 RPA 176
            P+
Sbjct: 669 APS 671


>05_04_0364 + 20658219-20658416,20658475-20658543
          Length = 88

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 235 VFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSYRSNINMF 98
           V ++RH  P   A QS+RP  +       P  SGR  SYR+  N++
Sbjct: 18  VMKSRH--PTRIA-QSARPTQLPETLTLQPGRSGRPVSYRTGRNLY 60


>05_03_0616 - 16227467-16228321
          Length = 284

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = -1

Query: 298 GPFESVEYSVKVPTERAREGFVFRTRHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSY 119
           GP  S        +    EG     RH++      Q ++P P+ +    +  LS  +S  
Sbjct: 18  GPSSSASAPAPAASSNEEEG-----RHQSQAQQQVQEAQPQPLAQQAPAAAGLSRYESQK 72

Query: 118 RSNINMFHEYYYQH 77
           R + N F +Y   H
Sbjct: 73  RRDWNTFLQYLRNH 86


>04_04_0329 +
           24449574-24449633,24450261-24450320,24450510-24450562,
           24450913-24450973,24451481-24451666,24451877-24451984,
           24452196-24453418,24453571-24454405
          Length = 861

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -2

Query: 357 PTWRASSLPSKLLRTYSKALVLSKALNILSKFPLRGRGKGLCSGLDTGPQEVRLPRAVGP 178
           P+  + SL S +   +    V+ K+++ +  F LR + KGL   +   P+E+R P ++  
Sbjct: 295 PSCSSRSLSSSI-DLHGNGHVIEKSISRVGSFNLR-QIKGLSGSMPLPPEELRCPISLQL 352

Query: 177 HRYSAILSSHQT 142
                I++S QT
Sbjct: 353 MHDPVIIASGQT 364


>11_06_0196 + 21144094-21144483
          Length = 129

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 93  SWNIFMLLRYDESRP-LRSGENSKWRCIGAGR 185
           SW    + +  E R   R+GE + WR +G GR
Sbjct: 29  SWRSTTMAKQAEERDGCRAGEGASWRRVGRGR 60


>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
            11064598-11064816,11065301-11065429,11066502-11068031,
            11068654-11069013,11069086-11069205,11069727-11069897,
            11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 415  AVGSLVATAHLPVHHYIRMTYMASLLLAVQVASDVLEG 302
            A+   VATAH P+   +R T  ++  +   +AS++L+G
Sbjct: 1152 AIRQQVATAHTPLAQTLRETIASASSINQGLASELLDG 1189


>05_03_0437 - 14012632-14012838
          Length = 68

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 180 GRLLWVAAPPGARCR 224
           GR LW+  PP  RCR
Sbjct: 54  GRKLWIELPPALRCR 68


>04_03_0435 +
           15902356-15902574,15902680-15902777,15905100-15905163,
           15906707-15907045
          Length = 239

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 206 SWGPVSSPEHKPFPRPLSGNFDRIFNAFERTN 301
           S G +   EHK  PR   GN ++    FER N
Sbjct: 117 SCGILKGKEHKLIPRFQPGNIEKNAEIFERVN 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,831
Number of Sequences: 37544
Number of extensions: 301484
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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