Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4837| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)                30   1.4  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    28   4.4  
SB_28803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              27   7.6  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 27   7.6  

>SB_4837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 415 AVGSLVATAHLPVHHYIRMTYMASLLLAVQV 323
           A+ S+V ++HLP+H YI   Y+ +     +V
Sbjct: 57  ALSSIVRSSHLPIHQYITNPYVTNTTFTPEV 87


>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
          Length = 453

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 223 RHRAPGGAATQSSRPAPIQRHFEFSPDLSGRDSSY 119
           R + P   +T+S +  P + HF+FSP + G  S Y
Sbjct: 392 RSKCPPSPSTRSYQ-GPSESHFQFSPSMHGSKSGY 425


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 109 CCFDMTSRAR*GLVRTQNGAVSVRADCSG 195
           C F++TSR R     T N  VSVR D SG
Sbjct: 824 CAFNITSRTRGLCPSTCNKTVSVRVDPSG 852


>SB_28803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 159 KWRCIGAGRLLWVAAPPGARCRVLNTN---PSRALSVGTLTEYSTLSK 293
           K  C    R  WVA P     ++ N N   P + LS+  +++ + LSK
Sbjct: 107 KATCASRSRHFWVANPRAFCSKIANNNKTEPVKRLSISNISKKAYLSK 154


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 152 ELKMALYRCGPTALGSRTSWGPVSSPEHKPFPRPLSGNFDRIFN 283
           E   AL++ G      R    P+  P  +PFP P+ G     FN
Sbjct: 766 EKTKALHKKGENIFMQRPFPPPMMGPMQRPFPPPMMGPMQGPFN 809


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 171 IGAGRLLWVAAPPGARCRVLNTNPSRALSVGTLTEY 278
           I   R  W A  PG R R+ +  PS+A  +GT++ Y
Sbjct: 189 ISLARASWQACAPGLRERLGSPCPSQA-QIGTISSY 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,728
Number of Sequences: 59808
Number of extensions: 340487
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)