Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S58715-1|AAB26211.2|   79|Homo sapiens MHC class III region comp...    29   8.1  
AF092085-1|AAC98380.1|  354|Homo sapiens complement protein C4B ...    29   8.1  

>S58715-1|AAB26211.2|   79|Homo sapiens MHC class III region
           complement protein.
          Length = 79

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 356 LHGEPPPCRPSCFGRTRRHWSFRKR 282
           L  +P PC  SCF R ++ W  R R
Sbjct: 36  LKPQPTPCCTSCFTRAKQRWQTRLR 60


>AF092085-1|AAC98380.1|  354|Homo sapiens complement protein C4B
           frameshift mutant protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 356 LHGEPPPCRPSCFGRTRRHWSFRKR 282
           L  +P PC  SCF R ++ W  R R
Sbjct: 311 LKPQPTPCCTSCFTRAKQRWQTRLR 335


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,065,838
Number of Sequences: 237096
Number of extensions: 1673328
Number of successful extensions: 4044
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)