Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.38 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.38 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 340 LLAVQVASDV-LEGIG-PFESVEYSVKVPTERARE 242
           +LAV   +D+ L+  G P E+V Y+V VPT+   E
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYNVAVPTKSILE 115



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 223 ES*TQTLPAPSQWEL*QNIQRFRKDQ 300
           +S T+T P+ +Q    +NI+RF K +
Sbjct: 533 KSSTETPPSYNQLNYNENIERFFKSK 558


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 340 LLAVQVASDV-LEGIG-PFESVEYSVKVPTERARE 242
           +LAV   +D+ L+  G P E+V Y+V VPT+   E
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYNVAVPTKSILE 115


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = -1

Query: 355 YMASLLLAVQVASDVLEGIGPFESVEY----SVKVPTERAREGFVFRTRHRAPGGAATQS 188
           Y+   LLA    + +  G+GP + ++Y    S+  P  R   G  F  R   P     QS
Sbjct: 278 YLHQQLLARYELNRLSNGLGPIKDIDYENVQSLYQPHLRGLNGLEFAGR---PQNLQLQS 334

Query: 187 SRPAPIQ 167
            R   IQ
Sbjct: 335 QRNQLIQ 341


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 330  SKLLRTYSKALVLSKALN 277
            +K+LRT  KA+VLS  L+
Sbjct: 1318 NKILRTCQKAVVLSMLLD 1335


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 346 SLLLAVQVASDVLEGI 299
           S L  +Q+A DVLEGI
Sbjct: 695 SWLERIQIALDVLEGI 710


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 346 SLLLAVQVASDVLEGI 299
           S L  +Q+A DVLEGI
Sbjct: 733 SWLERIQIALDVLEGI 748


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 11  STNRNLIFRGL*SLIIIRINKSV 79
           +T   L+F G+  LI+  +NK V
Sbjct: 138 TTYMQLVFMGIVELIMFTVNKYV 160


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 297 PMPSSTSEATWT 332
           P+P S S+ TWT
Sbjct: 62  PLPYSGSKCTWT 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,180
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)