Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0886
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13590.1 68418.m01572 expressed protein                             28   4.7  
At2g19090.1 68415.m02229 expressed protein contains Pfam profile...    28   4.7  
At5g56780.1 68418.m07086 expressed protein contains similarity t...    27   8.3  
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila...    27   8.3  

>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 231 NTNPSRALSVGTLTEYSTLSKGP-MPSSTSEA 323
           + NP+ +LS+G L+ Y  + K P +P++TSEA
Sbjct: 276 HVNPTCSLSLG-LSSYPPIEKSPSLPATTSEA 306


>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
           PF04782 protein of unknown function (DUF632), PF04783
           protein of unknown function (DUF630); expression
           supported by MPSS
          Length = 814

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +2

Query: 185 TALGSRTSWGPVSSPEHK------PFPRPLSGNFDRIFNAFERTNAFEY 313
           +A  S + W P+SSPE +      P P P +  +D  +N F   + + Y
Sbjct: 170 SASTSSSFWNPLSSPEQRLSSHNIPPPSPQNSQWDFFWNPFSSLDYYGY 218


>At5g56780.1 68418.m07086 expressed protein contains similarity to
           transcription repressor
          Length = 488

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 275 FCQSSH*EGAGRVCVQDSTPGPRRCGYPEQSARTDTAPF*VLTRPQRARLV 123
           FC+++   G    C + S  G +RC   ++   +DT+P  V  +P+ A+ V
Sbjct: 410 FCEATTKNGLP--CTRSSPKGSKRCWQHKEKTSSDTSP--VYFQPEAAKNV 456


>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1171

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 289 ESVEYSVKVPTERAREGFVFR 227
           E  E+SV +PTE ARE   FR
Sbjct: 103 EETEFSVDLPTESARERVEFR 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,763
Number of Sequences: 28952
Number of extensions: 218327
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)