Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0885
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   5.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   5.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.6  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    25   8.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.7  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   8.7  

>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/98 (27%), Positives = 37/98 (37%)
 Frame = +1

Query: 445 LRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQALAKKEREAEPICRVPLITSQKEE 624
           L + TVA+   +K        +   LIE  + SC      KE E  P   + L   + +E
Sbjct: 221 LLNNTVAVKQDHKLSANTFLSSPVKLIERESNSCSTISINKEDEVVPKSPLSLDRKKVDE 280

Query: 625 QLLIMSTSKPVVKLLINRHNNKYSYTSTSDDNLLKNIE 738
                S +K   +  I     K S TS S D    N E
Sbjct: 281 VEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFE 318


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 486 LFITVG*RYCAVTKIIQNSTEMLPTTINQNP 394
           +++ +  +YC V K +++  EM P  + Q+P
Sbjct: 471 IYLNLNEQYCLVMKDLKDGIEMKPKWLTQSP 501


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/80 (23%), Positives = 30/80 (37%)
 Frame = +1

Query: 445  LRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQALAKKEREAEPICRVPLITSQKEE 624
            LRD    +P       E+         +  T S L+    +  +  P   VP+I  Q   
Sbjct: 920  LRDSMEQVPLENHREFEISDRVSELSFDSSTGSVLEIADTRRNQDAPEKHVPVIEIQSSR 979

Query: 625  QLLIMSTSKPVVKLLINRHN 684
              L  +     V+LLI+ H+
Sbjct: 980  PSLEKTDQSTPVELLIDSHS 999


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 403 IDRCGKHFGTILNYLRDGTVALPDSYKEIMELL 501
           +DR G+  GT++N + D +    DS  EI+++L
Sbjct: 534 LDRLGEDLGTVINQMNDFSKP-DDSISEIVKVL 565


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 304 YTTIGTLTKSDNMLRT 351
           YTTIG LTK DN L T
Sbjct: 342 YTTIGLLTKVDNHLIT 357


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 520 LIEELTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSKPVVKLLINRHNNKYSY 699
           LI+E T   L   AKK+RE +   +   +  Q+E Q     T +  + LL  +H      
Sbjct: 188 LIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKKETLEK-INLLKRKHTG--GD 244

Query: 700 TSTSDD 717
            +T DD
Sbjct: 245 LTTEDD 250


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 487 IMELLAEAKYFLIEELT--ESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSKPVV 660
           I+ L+ E  + L++ LT   + L  + K + E   +   P+I     E LLI  + K  +
Sbjct: 161 IVCLVTENSFELLDILTFDTTPLFPIIKYDSENNGLMYKPMIVLHSNEFLLITGSPKDAI 220

Query: 661 KLLINRHNNKYSYTST 708
            L ++   N    T T
Sbjct: 221 GLFVDSQGNVTRSTLT 236


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 274 HIVTDCLLTTFCDLPTLFQNEEITSTR*YETTSTPGLSTIFLFQM 140
           H++     +T  D P + Q +E++S     T   PGL ++  F++
Sbjct: 211 HVILSYECSTNSDTPEITQYQEVSSCAYSMTIHVPGLCSLPAFKI 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,140
Number of Sequences: 5004
Number of extensions: 58925
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)