Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0885
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 73 2e-13
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 58 7e-09
07_03_0093 + 13330867-13332312 46 3e-05
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896... 31 0.74
02_04_0590 - 24154366-24155742 31 0.74
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 3.0
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618... 29 3.0
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 29 3.9
06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534 28 6.9
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530... 28 6.9
08_01_0027 - 195321-195932,197206-197415 28 9.1
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 72.9 bits (171), Expect = 2e-13
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Frame = +1
Query: 253 KGSPSQYVKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRMEVLTDSE-GWILIDRCGKH 423
+ S S V LN+GG + TT+ TLT+ + +ML MFSGR + + G + +DR GKH
Sbjct: 6 ESSSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPDTGMVFVDRDGKH 65
Query: 424 FGTILNYLRDGTVALPD-SYKEIMELLAEAKYFLIEELTESCLQALAKKERE 576
F +LN+LRDG A+PD S E +LL EA+Y+ + L + L K E
Sbjct: 66 FRHVLNWLRDG--AVPDMSESEYQQLLREAEYYQLLGLADCINDRLGWKNDE 115
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 58.0 bits (134), Expect = 7e-09
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Frame = +1
Query: 274 VKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRME--VLTDSEGWILIDRCGKHFGTILN 441
+ LN+GG+ + TT TLT+ D ++L SG + T +G + +DR G+ F +LN
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64
Query: 442 YLRDGTV-ALPDSYKEIMELLAEAKYFLIEELTESCL 549
+LRDG V AL D+ E +LL EA+Y+ + + E CL
Sbjct: 65 WLRDGAVPALADA--EYRQLLREAEYYRL-PVYEQCL 98
>07_03_0093 + 13330867-13332312
Length = 481
Score = 46.0 bits (104), Expect = 3e-05
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Frame = +1
Query: 265 SQYVKLNVGGTLFYTTIGTLTK--SDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTIL 438
S V LNVGG +F TT+ TL++ + + L ++ T + +DR + F T+L
Sbjct: 3 SSVVTLNVGGEVFQTTVATLSRAGASSPLASL------APTPASAPHFLDRDPRLFATLL 56
Query: 439 NYLRDGTVA--LPDSYKEIMELLAEAKYFLIE-ELTESCLQALAKKEREAEPICRVPL 603
++LR G +A PDS LLAEA++F +E L S A A P +PL
Sbjct: 57 SFLRRGRLAPTSPDSDPPSPALLAEARHFGVEGALLASLSPASAFSPLALRPSALLPL 114
>11_03_0014 -
8965966-8965989,8966788-8966920,8967447-8967529,
8967690-8967986,8970067-8970165
Length = 211
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 524 IRKYLASANNSMISL*LSGSATVPSRR*FKIVPKCFPQRSIKIHPSESVRTSI 366
+R+ +S N S SL SG A V R VP+ P K HP +T I
Sbjct: 3 VRRMSSSLNMSSSSLRSSGGADVDRRTTTATVPRRIPADQDKQHPKRETKTKI 55
>02_04_0590 - 24154366-24155742
Length = 458
Score = 31.5 bits (68), Expect = 0.74
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Frame = +1
Query: 250 LKGSPSQYVKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRME----VLTDSEGW---IL 402
+KG + V+LNVGG +F T TL + D ML M D EG
Sbjct: 1 MKGKRGR-VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYF 59
Query: 403 IDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYF 519
IDR + F +L+ LR G + +P + + L EA Y+
Sbjct: 60 IDRDPECFAVLLDLLRTGGLHVPPHVADGV-LCREALYY 97
>02_05_0833 + 32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 679 HNNKYSYTSTSDDNLLKNIELFDK 750
H+ +SY S D NLLK +E++D+
Sbjct: 946 HSGVFSYLSYRDPNLLKTLEVYDE 969
>02_02_0026 +
6187860-6187940,6188136-6188207,6188302-6188395,
6188480-6188640,6189053-6189123,6189231-6189312,
6189748-6189849,6189972-6190027,6190278-6190312,
6191495-6191579,6191658-6191717,6191819-6191858,
6192415-6192468
Length = 330
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 580 EPICRVPLITSQKEEQLLIMSTSKPVVKLLINRHNNKYSYTSTSDDNLLKNIELF 744
+P+ +PL ++E LL+ SK +V+ + + + D NLL N LF
Sbjct: 222 DPVTNLPLWYMREESPLLLYGFSKEIVECPVAESSEYQASALHCDSNLLFNGRLF 276
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +1
Query: 289 GGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGTVAL 468
GG + G + +ML S +ME SE +I GT++ + G L
Sbjct: 167 GGEAILVSSGLVLYCGDMLAHTLS-KMEFSVSSEAFIRAPGTRSEIGTVIQGVLLGLFLL 225
Query: 469 PDSYKEIMELLAEAKYFLIE--ELTESCLQ 552
P YK +++LA + + + E C Q
Sbjct: 226 PLLYKSSLQVLAYCRKLESQRTQTVEECTQ 255
>06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534
Length = 96
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 262 DCLLTTFCDLPTLFQNEEITSTR*YETTSTPGLSTIFLFQMYLYYI 125
DC L FCD +L Q R + P LS + F YL+++
Sbjct: 8 DCCLQLFCDRCSLSQMYRELKNRGVNPANGPVLSKLSHFYWYLWFL 53
>01_05_0268 -
20251413-20251565,20252420-20252674,20252905-20253055,
20253161-20253398,20253966-20254067,20254382-20254611,
20255599-20255724,20256056-20256828
Length = 675
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 355 FSGRME-VLTDSEGWILIDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIEE 531
F+G ++ +LTD G +L R +H+ I + DG+ + + LA+ LIE+
Sbjct: 168 FTGFLKTMLTDVVGQVLSTR--RHYAAIRMEMDDGSSSSTTAVPREFYCLAQCAPDLIED 225
Query: 532 LTESCL 549
+ SCL
Sbjct: 226 ICYSCL 231
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 406 DRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQAL 558
D C + ++ ++ GT+ L +K + LLA A + I ++ + C ++L
Sbjct: 153 DMCLESCSALIGFIY-GTIKLDQFWKHRLSLLAAANKYSISDIKDCCEESL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,491
Number of Sequences: 37544
Number of extensions: 375402
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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