Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0885
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    30   0.020
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    29   0.062
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +1

Query: 376 LTDSEGWILIDRCGKHFGTILNYLRDGTVALPD---SYKEIMELLAEAKYFLIEELTES 543
           LT + G  L+     +F TIL  +RD T  LP+   +  +I +LL +++Y  I E TES
Sbjct: 639 LTKARGHSLLVADRPNFVTILALVRDATARLPNGEGTRADICQLLKDSQY--IREQTES 695


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
 Frame = +1

Query: 439 NYLRDGTVALPDSYKEIMELLAEAK-----YFLIEELTESCLQALAKKEREAEPICR--V 597
           N L    + +  SYK  + L  E K     Y L   LT    + + KK      I    V
Sbjct: 432 NLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTV 491

Query: 598 PLITSQKEEQ----LLIMSTSKPVVKL--LINRHNNKYSYTSTSDDNLLKN 732
             +  Q EE+    L+  S +  +V +  L+N+ NN   YTS+ + NL  N
Sbjct: 492 LAVVRQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVN 542


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 528 FNQEIFSLRQ*LHDLFITVG*RYCAVTKIIQNSTEMLPTTINQNPPFRICE 376
           F+Q+  + R  +H L    G R C   +     T++   TI +N    +CE
Sbjct: 421 FDQDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKVEVCE 471


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 174 HPDSQLFSCSKCTYT 130
           H  S+ F C KC+Y+
Sbjct: 11  HFGSKPFKCEKCSYS 25



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 192 NTKRPVHPDSQLFSCSKCTYTT-FC 121
           N+    H +   + C+ CTY T +C
Sbjct: 33  NSHLKSHSNVYQYRCANCTYATKYC 57


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 432 STEMLPTTINQNPPFRICE--NLHPPTKH 352
           ST ++PTT   N PF+  E  N+   T H
Sbjct: 82  STTIVPTTQEINKPFKRLELFNITTTTIH 110


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 262 DCLLTTFCDLPTLFQNEEITSTR 194
           D  +TT   +P+L  N  ITS +
Sbjct: 409 DITVTTDASVPSLVSNVRITSVK 431


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 465 RYCAVTKIIQNSTEMLPTTINQNPPFRICENLHPP 361
           R  +V + + N T ++    ++NP       LHPP
Sbjct: 494 RVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPP 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,070
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)