Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0884
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.64
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 29 0.85
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 29 0.85
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 1.1
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.1
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 27 3.4
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 6.0
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 6.0
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 25 7.9
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.64
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = -1
Query: 385 FIKVTVIFLFGFNVELHRYYVFILQPLLTSILTHQSLIYGLPQPLYNTL----VNPIQIL 218
F+ V +L GF VE R FI+ +L ++ SL Y P L NTL N I IL
Sbjct: 329 FVSVFPEWLKGF-VEEKRTIGFIIYSVLDALFDLLSLDYSSPSFLNNTLSLMNANSITIL 387
Query: 217 SQSMYYVLV*SLNTL 173
Y+L L++L
Sbjct: 388 QDYPEYMLKLRLHSL 402
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 222 FCPNLCTMFWSNLSILCPKRWAKFKSIVW 136
F P+ T FW + I PK WAK++ +++
Sbjct: 97 FGPSWAT-FWFEVHIRLPKSWAKYEQVIF 124
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 28.7 bits (61), Expect = 0.85
Identities = 8/42 (19%), Positives = 23/42 (54%)
Frame = -1
Query: 397 LTWIFIKVTVIFLFGFNVELHRYYVFILQPLLTSILTHQSLI 272
+ W F+ T+ + +G ++ + +++FI+ + ++ H I
Sbjct: 111 INWYFLMTTLYYAYGESIYAYFHHLFIMDSFMLPLVLHHRFI 152
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 106 PFHILSPSLSKIVIYYLIVLDRNASGF 26
PF ++ S+ IV+Y+L L R A GF
Sbjct: 625 PFRFINISVFSIVLYFLTNLKRTAGGF 651
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/82 (21%), Positives = 39/82 (47%)
Frame = +2
Query: 8 QELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIER 187
++L+Q + + +Q +D +L Q ++R D + Q +D + + L +E+
Sbjct: 623 RQLLQEKEEELEIQ-KAAVDESLLQLSKLQLDRND------IDQAMDTQIDELLKSQLEK 675
Query: 188 LDQNIVHRLGQNLDRIDQSVVQ 253
LD + L + R+D S+ +
Sbjct: 676 LDDIVDSVLATGIQRLDTSLYE 697
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 287 GQDAGQQRLENEHIIPMQFHIKSEQEDDSYFYENPGQSLDSVNGL 421
G+DA + LE +H F + ED Y Y L SV+ L
Sbjct: 13 GKDAVVEYLETKHGFNAIFRLPQLNEDGEYIYRTGDLVLGSVDDL 57
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 412 NTIQRLTWIFIKVTVIFLFGFNVELHRYYVFILQPLLTSILTHQSLIYGLPQPLYNTLVN 233
N+I L WI I ++ G N L R++ L L L +SLI+ +P N L+
Sbjct: 109 NSIPSLAWINIDHPPVYKAGLNETLVRHFTQQLASAL-QFLRSRSLIHRDVKP-QNLLLQ 166
Query: 232 P 230
P
Sbjct: 167 P 167
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 324 T*YRCSSTLNPNKKMTVTFMKIQVNLWIV 410
T + CSS +NPN+ + +T V L+I+
Sbjct: 148 TGFDCSSRINPNEFIDMTIRGQNVRLYII 176
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTIDLNLAQRLGQSIER-LDQNIVHRLG 217
+ +LD+ I +T D+N+AQ + I+R L + + ++LG
Sbjct: 281 LSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLG 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,910
Number of Sequences: 5004
Number of extensions: 63574
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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