Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0884
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097     31   1.2  
05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308     29   4.7  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    28   6.2  
10_08_0234 - 16067579-16068157                                         28   8.2  
07_03_1722 + 29036754-29036782,29036783-29037098                       28   8.2  
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179...    28   8.2  

>03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097
          Length = 215

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 164 VGPNSNQLFGLIAELYSGPAFPYSESIFE*DCDLLFDCPGPECVWIPPA 18
           +G +SN  + L  E  +    P      E     L  CP P+ +W  PA
Sbjct: 10  IGSSSNSTYNLEGETPANQVIPVENYTMEGGIHPLLRCPAPQQIWSRPA 58


>05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308
          Length = 359

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -3

Query: 275 DLRSAPASVQHSGQSYPNFVPIYVLCFGLIS-------QYFALSVGPNSNQLFGLIAEL 120
           D++  P+S ++ G  YPN  P+Y + F   S         F+ S  P S  L G++  L
Sbjct: 296 DMKPGPSSERNYGLFYPNGTPVYNIGFDAASFSPSPTTSTFSSSSRPTSTFLMGVVVLL 354


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 59  IIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRID 238
           IID   ++ W   ME+L ++I +  G +I  +  + +  +IE         L  +LDR D
Sbjct: 187 IIDSESSETWLWFMEKLHEAIGEPAGLSICSDAGKGIDYAIEEELLEKSRGLNFDLDRSD 246

Query: 239 QSVVQ 253
             + +
Sbjct: 247 DFIAE 251


>10_08_0234 - 16067579-16068157
          Length = 192

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 4   GSGVNAGGIQTHSGPGQSNNRSQSYSKMDSEYGKAGPEYSSA 129
           G G  AGG    SG G  +      S  ++ YG  GP Y++A
Sbjct: 121 GGGGQAGGNWGSSGSGDGSGAGSGSSSANTYYG--GPSYANA 160


>07_03_1722 + 29036754-29036782,29036783-29037098
          Length = 114

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 225 WIGLTRVLYRGWG-RP*IKDWWVRM 296
           W+G  ++  R WG    +KDWW R+
Sbjct: 22  WVGFHQLKPRRWGVAQSVKDWWERL 46


>07_03_0200 -
           15016084-15016342,15016814-15016869,15016963-15017960,
           15018707-15018768,15019242-15019274,15019697-15019881,
           15020033-15020133,15020783-15020795,15021216-15021319,
           15021593-15021693,15022773-15022849,15022965-15023021,
           15023158-15023268,15023803-15023859
          Length = 737

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 288 PTSL*STVCPSLCTTLWSILSKFCPNLCTMFWSNLSILCPKRWAKFK 148
           P+SL  TVC ++C + W      C  + ++ WS+  +   K  A ++
Sbjct: 223 PSSLGDTVCAAVCASTWVEPHGRCTVVFSLAWSSPKVKFKKGNAYYR 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,888
Number of Sequences: 37544
Number of extensions: 385685
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)