Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0884
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72018-1|CAA50897.1| 570|Homo sapiens ORF protein. 34 0.42
L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein. 34 0.42
L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein. 34 0.42
BC111018-1|AAI11019.1| 658|Homo sapiens translin-associated fac... 34 0.42
BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear r... 34 0.42
BC008895-1|AAH08895.2| 425|Homo sapiens HNRPM protein protein. 34 0.42
BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear r... 34 0.42
AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mut... 34 0.42
AB209733-1|BAD92970.1| 615|Homo sapiens heterogeneous nuclear r... 34 0.42
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p... 32 1.7
Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein. 31 3.0
CR542095-1|CAG46892.1| 232|Homo sapiens VTI1B protein. 31 4.0
CR456757-1|CAG33038.1| 232|Homo sapiens VTI1B protein. 31 4.0
BT019960-1|AAV38763.1| 232|Homo sapiens vesicle transport throu... 31 4.0
BT019348-1|AAV38155.1| 232|Homo sapiens vesicle transport throu... 31 4.0
BC003142-1|AAH03142.1| 232|Homo sapiens vesicle transport throu... 31 4.0
AF060902-1|AAC73059.1| 232|Homo sapiens vesicle soluble NSF att... 31 4.0
AF035824-1|AAC52016.1| 232|Homo sapiens vesicle soluble NSF att... 31 4.0
AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein. 31 5.2
AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein. 31 5.2
>X72018-1|CAA50897.1| 570|Homo sapiens ORF protein.
Length = 570
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 267 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 324
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 325 RMGAGMGFGLERM 337
>L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein.
Length = 691
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 388 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 445
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 446 RMGAGMGFGLERM 458
>L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein.
Length = 729
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 426 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 483
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 484 RMGAGMGFGLERM 496
>BC111018-1|AAI11019.1| 658|Homo sapiens translin-associated factor
X interacting protein 1 protein.
Length = 658
Score = 34.3 bits (75), Expect = 0.42
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +2
Query: 101 ERLDQSIAQRLG----QTIDLNLAQRLG-QSIERLDQ---NIVHRLGQNLDRIDQSVVQR 256
+R D S+AQ G + L LA ++ Q + R N+ G + R D + ++
Sbjct: 207 QREDMSLAQSPGIWGEDPVKLTLALKMTRQDLTRTQMELNNMKANFGDVVPRRDFEMQEK 266
Query: 257 LGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQEDDSYFYE 385
+ + ++L A + + EH I MQ H+ + +E D +F E
Sbjct: 267 TNKDLQEQLDTLRASYEEVRKEHEILMQLHMSTLKERDQFFSE 309
>BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 427 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 484
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 485 RMGAGMGFGLERM 497
>BC008895-1|AAH08895.2| 425|Homo sapiens HNRPM protein protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 122 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 179
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 180 RMGAGMGFGLERM 192
>BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 427 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 484
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 485 RMGAGMGFGLERM 497
>AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mutant
protein.
Length = 691
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 388 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 445
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 446 RMGAGMGFGLERM 458
>AB209733-1|BAD92970.1| 615|Homo sapiens heterogeneous nuclear
ribonucleoprotein M isoform a variant protein.
Length = 615
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTID-LNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVD 274
M+R+ I +R+G +D + +R+G IER+ + + +++R+ Q+ ++R+G V+
Sbjct: 312 MDRVGSEI-ERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQT-MERIGSGVE 369
Query: 275 QRLVGQDAGQQRL 313
+ G G +R+
Sbjct: 370 RMGAGMGFGLERM 382
>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
protein.
Length = 2585
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Frame = +2
Query: 17 MQAESRRIPVQDNQII----DHNLTQRWTQNMERL-----DQSIAQRLGQTIDLNLAQRL 169
+Q + + + ++Q+I D N TQ+ ME+L DQS+ + +LNLAQ+L
Sbjct: 1798 LQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKL 1857
Query: 170 GQSIERLDQNIVHRLGQNLDRIDQSV 247
+++E + + R NL R+++++
Sbjct: 1858 HENLEEMKSVMKER--DNLRRVEETL 1881
>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
Length = 2663
Score = 31.5 bits (68), Expect = 3.0
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Frame = +2
Query: 17 MQAESRRIPVQDNQII----DHNLTQRWTQNMERL-----DQSIAQRLGQTIDLNLAQRL 169
+Q + + + ++Q+I D N TQ+ ME+L DQS+ + +LNLAQ L
Sbjct: 1818 LQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQEL 1877
Query: 170 GQSIERLDQNIVHRLGQNLDRIDQSV 247
+++E + + R NL R+++++
Sbjct: 1878 HENLEEMKSVMKER--DNLRRVEETL 1901
>CR542095-1|CAG46892.1| 232|Homo sapiens VTI1B protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>CR456757-1|CAG33038.1| 232|Homo sapiens VTI1B protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>BT019960-1|AAV38763.1| 232|Homo sapiens vesicle transport through
interaction with t-SNAREs homolog 1B (yeast) protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>BT019348-1|AAV38155.1| 232|Homo sapiens vesicle transport through
interaction with t-SNAREs homolog 1B (yeast) protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>BC003142-1|AAH03142.1| 232|Homo sapiens vesicle transport through
interaction with t-SNAREs homolog 1B (yeast) protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>AF060902-1|AAC73059.1| 232|Homo sapiens vesicle soluble NSF
attachment protein receptor VTI2 protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>AF035824-1|AAC52016.1| 232|Homo sapiens vesicle soluble NSF
attachment protein receptor protein.
Length = 232
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 92 QNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTV 271
++M RL A L T LN R QSIER HR+ D+I +++ LG+
Sbjct: 120 EHMNRLQSQRAMLLQGTESLN---RATQSIERS-----HRIATETDQIGSEIIEELGEQR 171
Query: 272 DQ 277
DQ
Sbjct: 172 DQ 173
>AY736182-1|AAU86898.1| 1989|Homo sapiens ninein isoform 6 protein.
Length = 1989
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQN---IVHRLGQNLDRIDQSVVQRLGQ 265
+ER+DQ + ++ DL+ A++L S+ +D + I R NL ++D+ +R+
Sbjct: 373 LERVDQVVREKEKLRSDLDKAEKLKSSMASEVDDHHAAIERRNEYNLRKLDEEYKERIAA 432
Query: 266 -----TVDQRLVGQDAGQQRLENEHII 331
++ + Q AG+QRLE E I
Sbjct: 433 LKNELRKEREQILQQAGKQRLELEQEI 459
>AF302773-1|AAG33512.2| 2090|Homo sapiens ninein-Lm isoform protein.
Length = 2090
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQN---IVHRLGQNLDRIDQSVVQRLGQ 265
+ER+DQ + ++ DL+ A++L S+ +D + I R NL ++D+ +R+
Sbjct: 373 LERVDQVVREKEKLRSDLDKAEKLKSSMASEVDDHHAAIERRNEYNLRKLDEEYKERIAA 432
Query: 266 -----TVDQRLVGQDAGQQRLENEHII 331
++ + Q AG+QRLE E I
Sbjct: 433 LKNELRKEREQILQQAGKQRLELEQEI 459
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,751,804
Number of Sequences: 237096
Number of extensions: 2220785
Number of successful extensions: 5359
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5358
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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