Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0884
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-13|AAB69968.1| 375|Caenorhabditis elegans Hypothetical... 36 0.037
Z81533-1|CAB04334.1| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical ... 29 4.2
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 5.6
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 5.6
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 5.6
Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 28 7.4
Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical pr... 27 9.8
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 9.8
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 9.8
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 9.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.8
>AF022985-13|AAB69968.1| 375|Caenorhabditis elegans Hypothetical
protein T15B7.15 protein.
Length = 375
Score = 35.5 bits (78), Expect = 0.037
Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = +2
Query: 26 ESRRIPVQDNQIIDH---NLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQ 196
ES+ + +NQ+I+H LT++ Q+M R++Q + ++ + L Q +G++ ER ++
Sbjct: 185 ESKGHTLMNNQVIEHLELELTRK-KQDMLRMEQMLEEKQSE-----LTQEIGKTQEREEE 238
Query: 197 NIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQEDDS 373
N+ R S++++ GQT ++ L + EN+ ++ +I+ E E +S
Sbjct: 239 NLKLR----------SLLEKSGQTTEKALKDSKRRLEESENKRKTTLEKYIQIENELNS 287
>Z81533-1|CAB04334.1| 329|Caenorhabditis elegans Hypothetical
protein F36G9.2 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 336 CSSTLNPNKKMTVTFMKIQVNLWIVLTD*AVSDF 437
C PN TV F I ++LW +L D A+S F
Sbjct: 38 CIIYRTPNSMKTVKFSLINLHLWTILLDYALSLF 71
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 221 FVPIYVLCFGLISQYFALSVGPNSNQLFG 135
++ +YVLCFG+ Y S+G +++ G
Sbjct: 376 YILVYVLCFGIAFPYIGNSIGTLFSEVLG 404
>AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical
protein Y59E1A.1 protein.
Length = 475
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 341 TASVLCVHSPTFVDQHPDPPVFDLRSAPASVQHS 240
T+ CV SP D PD PV D+ + HS
Sbjct: 365 TSPFFCVESPDVTDLSPDKPVEDILKLGTTHTHS 398
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = -2
Query: 216 PNLC-TMFWSNLSILCPKRWAKFKSIVW----PNR*AILWSSLSI 97
P C T FW N S LCPK + ++ N I WS L I
Sbjct: 57 PARCDTFFWGNFSFLCPKNLLSVQRSLYFRYQKNAKMIFWSYLVI 101
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 176 SIERLDQNIVHRLGQNLDRIDQSVVQRLG 262
S ERL + +VHRL ++LDR Q V +G
Sbjct: 441 SYERLFRWLVHRLNKSLDRTRQQSVSFIG 469
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 176 SIERLDQNIVHRLGQNLDRIDQSVVQRLG 262
S ERL + +VHRL ++LDR Q V +G
Sbjct: 441 SYERLFRWLVHRLNKSLDRTRQQSVSFIG 469
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 176 SIERLDQNIVHRLGQNLDRIDQSVVQRLG 262
S ERL + +VHRL ++LDR Q V +G
Sbjct: 441 SYERLFRWLVHRLNKSLDRTRQQSVSFIG 469
>Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.6 protein.
Length = 479
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 188 ISQYFALSVGPNSNQLFGLIAELYSGPAFPYSESI 84
IS + S+GP ++ L I +L+S P F + S+
Sbjct: 91 ISIFLLQSIGPRNSLLLAAILQLFSAPVFGLAYSL 125
>Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical
protein F02D8.3 protein.
Length = 370
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +2
Query: 143 IDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENE 322
+D+ + +IE+ + V RL +NL+R D ++ RL + + RL D G ++ N
Sbjct: 127 LDMTNLDEMWITIEKTVDS-VRRLVENLERQDINLQTRLAEKMRLRLEKYDDGSLKMCNP 185
Query: 323 HIIPM 337
IP+
Sbjct: 186 CPIPV 190
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 197 NIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQEDDS 373
NI+ LG+N + D V+ L + +QRL G++ ++ +I + E DD+
Sbjct: 406 NILKILGENPNSKDFKEVKGLVERFEQRLKGKELDDEQKNKAKLIEKALEMLLENFDDT 464
>Z75545-2|CAA99885.1| 327|Caenorhabditis elegans Hypothetical
protein K10D3.3 protein.
Length = 327
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 248 QHSGQSYPNFVPIYVLCFGLISQYFALSVGPNSNQLFG 135
+HS Q + PI F IS F L N+N LFG
Sbjct: 17 EHSLQRFSFIRPISFFSFSHISPLFYLKYRMNTNDLFG 54
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 158 AQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPM 337
AQ++ Q++E++ + V ++ D +Q L +D+R D +Q E HI M
Sbjct: 176 AQKIRQALEKMKEAKVTKIFVKFFVEDGEALQLL---IDERWTVADTLKQLAEKNHIALM 232
Query: 338 QFHIKSEQEDDSY 376
+ H E+ + Y
Sbjct: 233 EDHCIVEEYPELY 245
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 158 AQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPM 337
AQ++ Q++E++ + V ++ D +Q L +D+R D +Q E HI M
Sbjct: 193 AQKIRQALEKMKEAKVTKIFVKFFVEDGEALQLL---IDERWTVADTLKQLAEKNHIALM 249
Query: 338 QFHIKSEQEDDSY 376
+ H E+ + Y
Sbjct: 250 EDHCIVEEYPELY 262
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 158 AQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPM 337
AQ++ Q++E++ + V ++ D +Q L +D+R D +Q E HI M
Sbjct: 305 AQKIRQALEKMKEAKVTKIFVKFFVEDGEALQLL---IDERWTVADTLKQLAEKNHIALM 361
Query: 338 QFHIKSEQEDDSY 376
+ H E+ + Y
Sbjct: 362 EDHCIVEEYPELY 374
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q +L + D L Q +
Sbjct: 6975 DKHKQEADAKLQKENDDKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLK 7034
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7035 KENDDKLKQEAAAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLQKENDDKLKQEAD 7094
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7095 AKLQKENDDKLKQEADAKLQKEN 7117
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q A +L + D L Q +
Sbjct: 7007 DKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKENDDKLKQEADAKLK 7066
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7067 KENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEAD 7126
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7127 AKLQKENDDKLKQEADAKLQKEN 7149
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q +L + D L Q +
Sbjct: 6995 DKHKQEADAKLQKENDDKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLK 7054
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7055 KENDDKLKQEAAAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLQKENDDKLKQEAD 7114
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7115 AKLQKENDDKLKQEADAKLQKEN 7137
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q A +L + D L Q +
Sbjct: 7027 DKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKENDDKLKQEADAKLK 7086
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7087 KENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEAD 7146
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7147 AKLQKENDDKLKQEADAKLQKEN 7169
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q +L + D L Q +
Sbjct: 6995 DKHKQEADAKLQKENDDKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLK 7054
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7055 KENDDKLKQEAAAKLKKENDDKLKQEADAKLKKENDDKLKQEADAKLQKENDDKLKQEAD 7114
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7115 AKLQKENDDKLKQEADAKLQKEN 7137
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI- 181
D+ +A+++ D+++ + +N ++L Q A +L + D L Q +
Sbjct: 7027 DKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKENDDKLKQEADAKLK 7086
Query: 182 ----ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFH 346
++L Q +L +N D++ Q +L + D +L + + + EN+ + +
Sbjct: 7087 KENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEAD 7146
Query: 347 IKSEQEDDSYFYENPGQSLDSVN 415
K ++E+D + L N
Sbjct: 7147 AKLQKENDDKLKQEADAKLQKEN 7169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,710,251
Number of Sequences: 27780
Number of extensions: 345859
Number of successful extensions: 978
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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