Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0884
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 158 AQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQ 292
           A+RL   +      ++  +G N DR+   +  RL Q +D  L  Q
Sbjct: 21  AKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 10  GVNAGGIQTHSGPGQSNNRSQSYSKMDSEYG 102
           G+   G   HS  G++N+R  S       +G
Sbjct: 377 GLMPSGSSVHSDSGENNSRGHSGQSSSHHHG 407


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 305 QRLENEHIIPMQFHIKSEQEDD 370
           Q    EH+ P +FH ++  ++D
Sbjct: 397 QEDSEEHLTPKRFHSRAASKED 418


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 305 QRLENEHIIPMQFHIKSEQEDD 370
           Q    EH+ P +FH ++  ++D
Sbjct: 397 QEDSEEHLTPKRFHSRAASKED 418


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 124 SYTLVQPFHILSPSLSKIVIYYLIVLDRNA 35
           +Y L Q  H +  SLS + +  L   DR+A
Sbjct: 29  TYALNQSLHFVRASLSNLDMSVLECADRSA 58


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 124 SYTLVQPFHILSPSLSKIVIYYLIVLDRNA 35
           +Y L Q  H +  SLS + +  L   DR+A
Sbjct: 119 TYALNQSLHFVRASLSNLDMSVLECADRSA 148


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 451 NISLLKSLTA*SVNTIQRLTWIFIKVTVIFLFGFNVELHRYY 326
           N++LLK+ T   + T   L +  + V +   FGF +   R Y
Sbjct: 35  NVNLLKNRTGRYMFTYLHLLYQDVHVMIWIGFGFLMTFLRRY 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,688
Number of Sequences: 438
Number of extensions: 4953
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)