Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0883
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   4.5  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   7.9  

>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 584 CLSLRLFEIFISLHTHMLRLNVFYHSHIDHTMTKTGWLLRQFLIAL 447
           CL+L +  ++  LH H+L   +   +   H   +T   +RQFL+ +
Sbjct: 381 CLALMILCLYYDLHMHLLAHPISLSASQSHLTKQT---VRQFLVKI 423


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 581 LSLRLFEIFISLHTHMLRLNVFY 513
           L +++  +F+   TH  R+N+FY
Sbjct: 173 LDIQVHPVFLDPPTHSFRINIFY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,651
Number of Sequences: 5004
Number of extensions: 51623
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)