Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0883
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0658 + 21608474-21609401,21609996-21610012                       29   4.7  
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    28   8.2  

>12_02_0658 + 21608474-21609401,21609996-21610012
          Length = 314

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 682 YLIIKQKCFRTK*RLILLDTRKSNM 608
           YL+ K KCF  K  ++ LDTR S +
Sbjct: 252 YLLAKPKCFHPKAWVLALDTRSSTL 276


>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
            5184024-5184143,5184247-5184375,5184466-5184591,
            5185550-5185667,5186471-5186680,5186788-5187100,
            5187467-5187560,5187760-5187868,5188322-5188593,
            5188684-5188811,5188977-5189211,5189794-5189982,
            5190069-5190349,5190431-5190698,5190719-5190961,
            5191598-5191680,5192484-5192493
          Length = 1366

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 434  QINSVMQSKTDVKASPFLSLCDLYVSDRTRLILACVCVEI*ISQRVSVTDKFIKLY 601
            Q+ S++ S  D+ A+P L + DL+  + T+ ++  V   + ++    V   F++LY
Sbjct: 1226 QVTSILHSYPDIIATPSLVMMDLHNLELTKDLVGLVISILLLADFSLVLLTFLQLY 1281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,803
Number of Sequences: 37544
Number of extensions: 264359
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)