Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0883
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 438 ICPIVLTKRRYNNLSKR 388
           + P +L  RRYN  SKR
Sbjct: 348 VLPRLLVMRRYNTPSKR 364


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 527 LNVFYHSHIDHTMTK 483
           LN+  H+ ++HT+TK
Sbjct: 252 LNLSLHASLNHTLTK 266


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 421 YKKKVQQFKQTNNRSNYLDIEF*LEIFDIKSKREI 317
           Y    ++FKQ  N  N +D+    +   ++ +RE+
Sbjct: 8   YSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,888
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)