Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0880
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   7.3  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   7.3  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   9.7  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 215 SPLLDLDISYNLITFNVLQLSLILSK 138
           SP ++ DIS ++   NVL  +L++SK
Sbjct: 259 SPFMNTDISADINPINVLITALLISK 284


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 25  AYFIGLIIDNYYIDYYAFYAL 87
           A+++ L++ N+Y  Y  FY +
Sbjct: 38  AFYVSLLVWNFYFGYRVFYRI 58


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 77  FTHYFDNLKINEYY 118
           FTHY + L   EYY
Sbjct: 188 FTHYIEELSFGEYY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,853
Number of Sequences: 5004
Number of extensions: 17901
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)