Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0877
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0983 - 23281787-23281931,23282045-23282163,23282765-232828...    27   8.0  

>08_02_0983 -
           23281787-23281931,23282045-23282163,23282765-23282871,
           23284392-23284470,23285054-23285143,23285259-23285531,
           23285617-23285769,23285969-23286290,23286428-23286672
          Length = 510

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 325 QNRRNGKDAIFHPQQVHPLRLRRITQSHTAPE 230
           + R  G  A+F  Q  + LRLRR+ Q+  AP+
Sbjct: 124 KERMIGPSALFFHQGEYHLRLRRLVQAALAPD 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,656
Number of Sequences: 37544
Number of extensions: 161222
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)