Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0877
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-9|AAV58870.1|  648|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U55373-8|AAD34666.1|  805|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U55373-7|AAC25890.2|  890|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL032654-8|CAB63390.1|  174|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U55373-9|AAV58870.1|  648|Caenorhabditis elegans Hypothetical
           protein F26F12.3c protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 103 LMHFVYSFGSNNNNSCYSCPGHW 35
           L+H  ++    N +SCYSC  HW
Sbjct: 394 LVHIDHNTNEFNTSSCYSCGIHW 416


>U55373-8|AAD34666.1|  805|Caenorhabditis elegans Hypothetical
           protein F26F12.3b protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 103 LMHFVYSFGSNNNNSCYSCPGHW 35
           L+H  ++    N +SCYSC  HW
Sbjct: 551 LVHIDHNTNEFNTSSCYSCGIHW 573


>U55373-7|AAC25890.2|  890|Caenorhabditis elegans Hypothetical
           protein F26F12.3a protein.
          Length = 890

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 103 LMHFVYSFGSNNNNSCYSCPGHW 35
           L+H  ++    N +SCYSC  HW
Sbjct: 636 LVHIDHNTNEFNTSSCYSCGIHW 658


>AL032654-8|CAB63390.1|  174|Caenorhabditis elegans Hypothetical
           protein Y52B11A.8 protein.
          Length = 174

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 225 YCSGAVCDCVMRRSRSGCTC 284
           +C    C C+ RRSRS  +C
Sbjct: 98  FCDDTFCSCLERRSRSSKSC 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,196
Number of Sequences: 27780
Number of extensions: 165962
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)