Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0876
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 462 TLLQIFTLKNPKIFSLKFHLNTQCPL 385
           T L++FT+ N  +F +  + +T C +
Sbjct: 294 TALRLFTIDNKLLFGVLAYYSTTCDI 319


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 518 SPLH*NLPLIFVSRCFFTVGV 580
           SP+   +P+I  S C+F +G+
Sbjct: 499 SPIFIIIPVILTSVCYFMIGL 519


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 180 IYLPENPLYQLNHHCSLNQLFLRNHYYVQIHLSI*NPHS 64
           IY P   L  L +    NQ     HY    ++S+ NP S
Sbjct: 349 IYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPES 387


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  DSAWNGDSIWRGESERNSDSLERAGSVSNG 143
           D+  N  S  +GE+ RNS +    G V +G
Sbjct: 395 DNRNNTSSRAQGETSRNSKNSGNGGGVQDG 424


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 111 NHYYVQIHLSI*NPHSMLNLHCLLSVLCQMSMMY 10
           NH  VQ  ++   P  +    C+ + L QMSM+Y
Sbjct: 316 NHAIVQSLVNSMKPKEVPGPCCVPTQLGQMSMLY 349


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 54  DSAWNGDSIWRGESERNSDSLERAGSVS 137
           D+AW G ++   +       +ERA SV+
Sbjct: 320 DAAWGGGALVSAKHRHLLKGIERADSVT 347


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 519 LTQWLKLKPLHLNQPMTKKTLL 454
           L QW KL P   + P+T +  L
Sbjct: 225 LVQWAKLVPHFTSLPLTDQVQL 246


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 448 IHTEEPQDIFPE 413
           +HT EP D+ PE
Sbjct: 216 LHTGEPTDLTPE 227


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 357 VNSCPYNLISGGIVCLDEIS 416
           +N C  N    G  C+D+I+
Sbjct: 69  INDCKVNPCENGGTCVDKIN 88


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 518 SPLH*NLPLIFVSRCFFTVGV 580
           SP+   +P+   S C+F +G+
Sbjct: 499 SPIFIIIPVTLTSVCYFMIGL 519


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,607
Number of Sequences: 336
Number of extensions: 2856
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)