Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0876
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    28   1.2  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   4.8  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.4  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   8.5  

>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 520 ANAMVETEAITPEPTYDKENVVADIHTEEPQDIFPEISSKHTMPPEIRL 374
           A   V+   + PEP  D+E   +D   EEP++I   I+   T+   I L
Sbjct: 479 AERSVKVTKVEPEPI-DEEEAFSDDEEEEPEEIKERIAIPKTLIATITL 526


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
 Frame = -2

Query: 295 TQNQNFDELQNNRISSPAKEFELFANSPKPS-ETFTPKENL-SARXXXXXXXXXXXXXPA 122
           ++N N       ++   A    +  N+PK + E+    ENL S                 
Sbjct: 37  SENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNEPTSEASKPLLNE 96

Query: 121 LSKESLLRSDSPLHIESPFHAESPLPAECPLSDEHDVPVE 2
           L  E  L  + PL  E     E PLP E PL DE  VP E
Sbjct: 97  LVPEEPLPREPPLPNEPV--PEEPLPGEPPLPDE-PVPEE 133


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 341 RFACSFTSASCITSSDPKPKFRRASKQQDFFSGKRIRI 228
           RF C FTS SC        K+ R   +  F   +R  I
Sbjct: 534 RFPCIFTSFSCYNCISGTRKYSRQYSRDKFHYNQRTTI 571


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 111 SLERAGSVSNGDSVGRGDSRADKFSLGVKVSLGLGELA 224
           S   + S+S GD++   D+   KF LG+   +   ELA
Sbjct: 167 SFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELA 204


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 443  VNICNNVFFVIGWFRCNGF-SFNH 511
            +N C    F  GW+  +GF  FNH
Sbjct: 1177 INCCFATLFFFGWYYPSGFYEFNH 1200


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 283 NFDELQNNRISSPAKEFELFANSPKPSETFTPKEN 179
           NF  +  NR+ +  +  ELF  S   S+ ++P+++
Sbjct: 86  NFPRVNPNRLMTSKRPNELFKTSSMSSDCYSPQKS 120


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +3

Query: 3   STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSL--ERAGSVSNGDSVGRGDSRAD 176
           ST  S  ++K     NG+ +   +     +  R++DSL   +     N DSV    ++  
Sbjct: 404 STPASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSGKGKGEENEDSVFETRAKIY 463

Query: 177 KFSLGVK--VSLGLGELANNSNSFAGEEILL 263
           +F    K    +G+G L  N +   G   +L
Sbjct: 464 RFDATSKSYSDIGIGPLKINVDRDTGSARIL 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,125
Number of Sequences: 5004
Number of extensions: 46324
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)