Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0876
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 33 0.23
06_03_0496 - 21415596-21416068,21416618-21417224 32 0.31
09_04_0179 - 15366119-15366916 31 0.53
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 29 3.8
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 28 5.0
04_01_0353 - 4623910-4624812 28 5.0
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 6.6
10_08_0234 - 16067579-16068157 27 8.7
08_02_0826 - 21583507-21583555,21584000-21584679 27 8.7
04_04_0690 - 27300048-27300929 27 8.7
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 18 CSSDKGH---SAGNGDSAWN-GDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 170
C SD G S+G+G S+WN GD I G+S+ S S G+ G GRG R
Sbjct: 996 CGSDWGSPKFSSGDGPSSWNKGDKI-GGDSQNGSWS-RPGGNFEGGRGFGRGRGR 1048
>06_03_0496 - 21415596-21416068,21416618-21417224
Length = 359
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 30 KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGR 158
KG A + D W GESE + DSL R SV V R
Sbjct: 249 KGKGANKKNEGQREDEDWIGESEDDKDSLSRGSSVKRSKYVTR 291
>09_04_0179 - 15366119-15366916
Length = 265
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKF 182
S G+ S G AG+G G GE E G G G + F
Sbjct: 100 SAGSGAGSYAGSGAGSGSGYNQGQGTGEGEGEGQGQGYGSGHGAGTGSGYGEGHGEGNGF 159
Query: 183 SLGVKVSLGLG-ELANNSNSFAGE 251
G G G N S S GE
Sbjct: 160 GSGYGEGHGEGYGEGNGSGSGYGE 183
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 30 KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNG----DSVGR-GDS 167
+G + +GD +GD WR + +SD + +V+ G D++GR GD+
Sbjct: 65 RGATGRDGDGDSDGDGAWRRATGGSSDMTDATATVARGSGRLDTLGREGDT 115
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 36 HSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGR 158
H G +A G + R E+ERN +L A +GD V R
Sbjct: 238 HEVERGQAASFGKVLLRTENERNETALHDAVRAGDGDMVRR 278
>04_01_0353 - 4623910-4624812
Length = 300
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 12 TSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKFSLG 191
T+ ++G S GNG + G+ + S + S S G ++GRG S A++ G
Sbjct: 230 TARDHERGGSTGNGLGRGRSSAEEVGDGDAGSTARGHGRSGSTGGALGRGRSIAEEVGDG 289
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 103 LRSDSPLHIESPFHAESPLPAECPLSDEHD 14
+ S P+H+E P AE+ P E P D H+
Sbjct: 596 VESSPPMHVEDPKDAEAGQPCE-PAKDAHN 624
>10_08_0234 - 16067579-16068157
Length = 192
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 33 GHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 170
G + GN S+ +GD G ++++ S +N D+ G G+ +
Sbjct: 124 GQAGGNWGSSGSGDGSGAGSGSSSANTYYGGPSYANADANGNGNGK 169
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 27.5 bits (58), Expect = 8.7
Identities = 27/84 (32%), Positives = 37/84 (44%)
Frame = +3
Query: 3 STGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKF 182
S +S S G SAG+ SA +G G S + RAGS + G + G G S A +
Sbjct: 111 SGSSSRSGGGGSSAGS--SAESGAGSNAGPGGAGSYAGSRAGSYA-GSNGGDGGSGAGSY 167
Query: 183 SLGVKVSLGLGELANNSNSFAGEE 254
+ G G + S+AG E
Sbjct: 168 A-GSSAGSYAGSNGGGAGSYAGSE 190
>04_04_0690 - 27300048-27300929
Length = 293
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +3
Query: 12 TSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADK---- 179
+S + G S G GDS GDS G +S + V G GD+ A
Sbjct: 11 SSSDAIAGASEGPGDSEPRGDS--SGAIRGDSSGAKMGAGVGATIGAGAGDTGAGAGDTG 68
Query: 180 FSLGVKVSLGLGELANNSNSFAGEEI 257
G KV + G ++S AG ++
Sbjct: 69 AGAGAKVGVATGARTGAASSGAGADV 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,488
Number of Sequences: 37544
Number of extensions: 283343
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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