Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0876
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.19 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 496 AITPEPTYDKENVVADIHTEEPQDI 422
           AI PEP   + +++ +I+  EPQDI
Sbjct: 634 AIRPEPIDAQFDIIQNIYIPEPQDI 658


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 430 QDIFPEISSKHTMPPEIRLYGQEFTLSE 347
           Q + P++S   T P E RLY      S+
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
 Frame = +3

Query: 12  TSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKFSLG 191
           + CS     S  +  S+ N D      S   SD ++  G  SN        S       G
Sbjct: 174 SECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSG 233

Query: 192 VKVS---LGLGELANN 230
           V +S   L L E+ +N
Sbjct: 234 VTMSTSRLTLSEMMDN 249


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 295 TQNQNFDELQNNRI 254
           T+N NFD +Q N I
Sbjct: 318 TKNPNFDRMQGNPI 331


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 162 PLYQLNHHCSLNQLFLRNHYYV 97
           P+YQ +HH   +Q+  +   Y+
Sbjct: 68  PIYQSHHHLHHHQVLYQQSPYL 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,362
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)