Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0875
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    29   0.68 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 235 PRECIFLPPSHGSL-ERLHILSFPRLEVGQLGKHWLHPKDP 116
           P + + L P+  S  E+LH   FP L V +    WLH   P
Sbjct: 267 PEKQVTLDPNDPSFYEQLHDKYFPNLPVDEKQMQWLHDPSP 307


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 326 TSATPDTFIR*TSESTDPPP 267
           T + P TF+R  S STD PP
Sbjct: 405 TPSKPSTFVRPHSSSTDSPP 424


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 556  KCQSIGHEFATELRSL 603
            KCQS+  EF TELR L
Sbjct: 962  KCQSMEREFKTELRKL 977


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 180 ICRRSRDPWEGGRKIHSRGRYLPREIGYNWRRICGLRS 293
           + R+S  P+ G  ++H        +  YNW  I   RS
Sbjct: 417 LSRKSLPPYNGIHRLHESPSQFSNQSRYNWEPILENRS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,732
Number of Sequences: 5004
Number of extensions: 68459
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)