Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0875
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0005 - 60264-61205                                               28   6.6  
01_04_0049 - 15422996-15423407,15423954-15424114                       28   6.6  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    28   8.7  

>10_01_0005 - 60264-61205
          Length = 313

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 567 RLAFDGAFVAPGGCLSDTVTIAKRALSQVLLHHSSTEGDLRFWVESELSLRVGEQQVQLR 388
           +L  DG FV  G   S    +  RA+ Q + H+S  +      + +E+S  +GE  V + 
Sbjct: 244 QLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPK------ILAEVSSGLGEAMVGIN 297

Query: 387 VQS---HVENF 364
           +     HVE F
Sbjct: 298 LSDPKIHVERF 308


>01_04_0049 - 15422996-15423407,15423954-15424114
          Length = 190

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 182 YSVFSST*GRSARKTLASPKRPPFPVILNFIPG*MARGSMPTPSGCESDQK*FSGVLSES 3
           Y V SS  G SA  +   P +    ++L  +    ARGS     GC SD++   G   ++
Sbjct: 50  YLVNSSGSGTSAAASTGRPHQRRHRLVLRLLRLQAARGSTRCSQGCPSDRRRVRGAAQDA 109


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 168 GKDRICRRSRDPWEGGRKIHSRGRYLPRE-IGYNWRRICGLRSSSDE 305
           G+D + R SR         HS G +LPR+ IG    ++  +R S  +
Sbjct: 140 GEDSLRRLSRPSTSSSSSAHSNGHHLPRKPIGEIHLKVSSVRESRSD 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,816,106
Number of Sequences: 37544
Number of extensions: 500982
Number of successful extensions: 1261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)